Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1309
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   2.0  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   2.7  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   2.7  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   2.7  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    24   6.3  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      23   8.3  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    23   8.3  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  APCRSTNEALARRGRHGTTV 82
           A C ST  +L R+ RHG TV
Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 12  LLAAHPADQQTRLWRG 59
           L++AHP   +TR+W G
Sbjct: 250 LVSAHPFTTETRIWNG 265


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  RGAPCRSTNEALARRGRHGTTVAYIV 94
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  RGAPCRSTNEALARRGRHGTTVAYIV 94
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 38  TNEALARRGRHGTTVAYIVDDSG 106
           T+ A    G HGTT+  ++ DSG
Sbjct: 205 THSATKWIGGHGTTIGGVIVDSG 227


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 133 TLNND---YVSNFQCRIY*CKTSQSYLPHFISILD**STSS 246
           +LNN    ++  +QC  Y  +T++ YL ++   L    TSS
Sbjct: 806 SLNNSSRKFLELYQCFFYVLQTNEMYLANYFQALKTEGTSS 846


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  EALARRGRHGTTVAYIVDDSGSDHKFP 124
           EALAR      TV Y V D   ++K+P
Sbjct: 81  EALARVRAKPETVLYKVADPNENNKYP 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,144
Number of Sequences: 5004
Number of extensions: 15883
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)