Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1309
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344...    27   4.1  
07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    25   9.4  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    25   9.4  

>04_04_0466 +
           25433678-25434007,25434118-25434176,25434345-25434426,
           25435024-25435122,25435750-25435831,25436759-25436823,
           25437241-25438308,25438369-25438446,25438550-25438596,
           25438734-25438779,25438871-25438950,25439050-25439166,
           25439842-25439923,25440156-25440281,25440415-25440489,
           25440743-25440868,25441542-25441646
          Length = 888

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 280 STPKALDSNPYYWKCFTSLI 221
           S+P   +++ Y+WK FTS++
Sbjct: 365 SSPNMKETDEYFWKAFTSVL 384


>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 DTLNNDYVSNFQCRIY*CKTSQ 195
           +TLN D +S+F  R+  C+T +
Sbjct: 89  ETLNKDIISHFVLRLVYCRTEE 110


>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 62  HASPEPRLLIGRVRREQERL 3
           H SPE R L+GR+  ++ R+
Sbjct: 513 HVSPEERFLVGRIGPKEYRI 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,531
Number of Sequences: 37544
Number of extensions: 104029
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)