Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1309
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24065.1 68416.m03022 expressed protein ; expression supporte...    27   2.6  
At1g76870.1 68414.m08945 hypothetical protein                          25   8.1  

>At3g24065.1 68416.m03022 expressed protein ; expression supported
           by MPSS
          Length = 135

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -3

Query: 301 IMTIRIKSTPKALDSNPYYWKCFTSLI*K*NGVSMTAKSYISKYDTE 161
           + T+++ +   ALDS+P+  +C +S +   + V    ++Y+  +DT+
Sbjct: 28  VFTVKVTNN-LALDSHPFTIRCTSSKLDTSSQVLFRGETYVLMFDTD 73


>At1g76870.1 68414.m08945 hypothetical protein
          Length = 385

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 74  TTVAYIVDDSGSDHKF 121
           T ++YI +DSGSD KF
Sbjct: 98  TALSYIGEDSGSDKKF 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,724,530
Number of Sequences: 28952
Number of extensions: 80658
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)