Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1; ...    37   0.33 
UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep: Pol...    36   1.0  
UniRef50_UPI00006CF9F6 Cluster: hypothetical protein TTHERM_0042...    35   1.4  
UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finge...    34   3.1  

>UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 607

 Score = 37.1 bits (82), Expect = 0.33
 Identities = 27/139 (19%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
 Frame = +1

Query: 49  FGAVVTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMES--MKNAWNEVVKT 222
           F A +  +++    F  +LL  L I ++   F      +    + E   + N+ + + + 
Sbjct: 44  FSAAIGAVIANRNQFAKILLVILAILLLPVLFIVMLPGLIFGSLTEQSDVLNSNSMISEN 103

Query: 223 LSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ*PV*LISTPYNY----NSNIVVDELC-- 384
           +  + DA+V V + + + ++ ++  ++  L Q     I+ PY Y    N+N+++ + C  
Sbjct: 104 IRASRDAIVEVLEESHEDILAEIHAAISRLPQGDTASINDPYTYSISVNANLLISQFCAS 163

Query: 385 RWDHQILLINRNKHILDQN 441
           + D++ + +N+ K ++ +N
Sbjct: 164 QDDYKNINLNQLKKLIREN 182


>UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep:
           Polyprotein - Yokose virus
          Length = 3425

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  PIFFGAVVTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMESMK-NAWNEVV 216
           P++  AVV +   +  +    ++ C+ + +VA A+ +   N+EKRD ++S   ++W  VV
Sbjct: 261 PLYALAVVGISYMLGSNVGQRIIICILLLLVAPAYSTHCTNVEKRDFLQSTSGSSWTTVV 320


>UniRef50_UPI00006CF9F6 Cluster: hypothetical protein
           TTHERM_00420820; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00420820 - Tetrahymena
           thermophila SB210
          Length = 523

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 438 KYMVIIVSVHILPPR*Y---FKTVVSCEQFEFV*YYYINRILLAFNLMFY*IYLRLIFKN 608
           KYM++ +S++++ P  +   +K     + F+   Y+Y+N ILL   L+   I ++++  N
Sbjct: 161 KYMILEMSIYLIFPNPWLTDYKVYFFVDYFQMEVYHYLNEILLLIMLLRILIMVKIVLIN 220

Query: 609 V*W 617
             W
Sbjct: 221 TQW 223


>UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finger
           protein 709; n=1; Equus caballus|Rep: PREDICTED: similar
           to zinc finger protein 709 - Equus caballus
          Length = 1224

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 120 YRCCGSSFSIRNEEYRET*CH-GIHEECLERSREDPKRCWRCGRSRIQANRKECH 281
           YR CG  F   +  Y    CH G+  +  +   E P +C +CGR+ I  +  + H
Sbjct: 115 YRACGKVFMRHSPLYGHIRCHTGLKPDEYQTDGEKPYKCKKCGRTFIYHHTFQRH 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,731,280
Number of Sequences: 1657284
Number of extensions: 10987938
Number of successful extensions: 24531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24520
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)