Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    25   0.67 
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    25   0.67 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.3  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  VYIFQSLSFLEPLSR*LFLLKWILDCYFSVVFISLLWQ 136
           +Y+ Q++S  E   R + L+  +   YF V+ IS   Q
Sbjct: 197 IYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVISTFLQ 234


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  VYIFQSLSFLEPLSR*LFLLKWILDCYFSVVFISLLWQ 136
           +Y+ Q++S  E   R + L+  +   YF V+ IS   Q
Sbjct: 123 IYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVISTFLQ 160


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 LISTPYNYNSNIVVDELCR 387
           LI+  YN+N N +  +LC+
Sbjct: 419 LITPFYNFNENTIHSKLCK 437


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 394 DPNDTIHPQRYCCCNYKVLKSIKPV 320
           DP   + P  + C NY  L  + P+
Sbjct: 159 DPGPALPPTGFLCNNYPPLPQVPPL 183


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 394 DPNDTIHPQRYCCCNYKVLKSIKPV 320
           DP   + P  + C NY  L  + P+
Sbjct: 159 DPGPALPPAGFLCNNYLPLPQVPPL 183


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 446 GNNCFCTH 469
           G NC CTH
Sbjct: 563 GQNCMCTH 570


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -2

Query: 397  GDPNDTIHPQ 368
            GDP+DT++P+
Sbjct: 1476 GDPSDTLNPR 1485


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 61  VTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEK 171
           VTLI+S +     +    L    +   FP+E +NI +
Sbjct: 265 VTLILSCDAVLEEVKTTLLLAYKIRQVFPNEKKNISE 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,446
Number of Sequences: 336
Number of extensions: 3163
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)