Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    28   1.2  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   2.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.9  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   6.6  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   6.6  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   8.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.8  

>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 166 EKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKM 291
           ++RD+++++ N W   V  L  AGD +     P +  +++K+
Sbjct: 38  QRRDILKTINNFW---VVVLEAAGDEISQYITPEDSVLLEKL 76


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 425 IF*IKIHGNNCFCTHSSP 478
           ++ IK H +NCFC   SP
Sbjct: 187 VYDIKAHNSNCFCIEFSP 204


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 38  SLSFLEPLSR*LFLLKWILDCYFSVVFISLLWQQLFHQKRGI*R 169
           SL+ L  L + L +L  + D YFS + I+ LWQ   +QK+ I R
Sbjct: 631 SLAELTSLEQMLCIL--MKDGYFSHLVITKLWQVYSYQKKDISR 672


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +1

Query: 160 NIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVK---SLTQ*PV* 330
           NIE++       N   E ++ +    +A+  + +  +   +D++ D ++   ++++    
Sbjct: 83  NIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEIST 142

Query: 331 LISTPYNYNSNIVVDEL 381
           +ISTP   N+ I  DEL
Sbjct: 143 MISTPVGLNAEIDEDEL 159


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 88  DFRLLLLCCLYIAV-VAAAFP-SETRNIEKRDVMESMKNAWN 207
           D  ++LL  + +A  V   F  ++TRN + +D M ++K  WN
Sbjct: 330 DAEVMLLATILVAANVCYGFDDAQTRNSKYKDSMFTVKTNWN 371


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 113 QQRSSNLKSISTETISVTTAP 51
           ++RS NLKS+  ET+++ +AP
Sbjct: 58  RKRSVNLKSLPFETLTLDSAP 78


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 539 IIILNKFKLFT*DNSLKISSRGKNVYRNNYYHVF 438
           ++  N   +    +S+ I S GK V + NY H+F
Sbjct: 759 VLTTNSLNVLKEADSIYILSNGKIVEKGNYEHLF 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,581
Number of Sequences: 5004
Number of extensions: 50501
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)