BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1307 (617 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375... 28 5.2 10_08_0711 + 20073470-20073799,20073882-20074274 27 9.0 02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 27 9.0 02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 27 9.0 >01_05_0153 + 18635495-18636952,18637262-18637333,18637448-18637595, 18637690-18637871 Length = 619 Score = 28.3 bits (60), Expect = 5.2 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 145 PSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAV 246 P ET N + +++E+ N +++V T + G+A+ Sbjct: 298 PDETENRSQEEIVEASLNVLHKLVSTTGETGEAL 331 >10_08_0711 + 20073470-20073799,20073882-20074274 Length = 240 Score = 27.5 bits (58), Expect = 9.0 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 520 SNCSHETTVLKYHRGGRMCTETIITMYFD 434 SN H+T + H G +C +II Y D Sbjct: 51 SNPVHKTVPVLIHNGNPICESSIIVQYID 79 >02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064, 23340311-23340482,23340880-23340940,23341257-23341389, 23341938-23342208,23342595-23342734,23342912-23342998, 23343078-23343586,23343671-23344488,23344522-23344720, 23345552-23345696,23345728-23345782,23347652-23347778, 23347867-23347936,23348448-23348553,23348636-23348747, 23349243-23349365,23349468-23349627,23349751-23349827, 23349925-23349977,23350151-23350205,23350500-23351174 Length = 1495 Score = 27.5 bits (58), Expect = 9.0 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +3 Query: 189 HEECLERSRE-DPKRCWRCGR 248 H+ + + E DPK+CW CG+ Sbjct: 1425 HQVAVRQQEEFDPKKCWICGK 1445 >02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602, 23293855-23293979,23294788-23294920,23295468-23295739, 23295806-23295873,23296126-23296265,23296443-23296529, 23296610-23297118,23297203-23298020,23298054-23298252, 23299084-23299228,23299260-23299314,23301184-23301310, 23301399-23301468,23301980-23302085,23302168-23302279, 23302775-23302897,23303000-23303159,23303283-23303359, 23303457-23303509,23303683-23303737,23304032-23304706 Length = 1478 Score = 27.5 bits (58), Expect = 9.0 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +3 Query: 189 HEECLERSRE-DPKRCWRCGR 248 H+ + + E DPK+CW CG+ Sbjct: 1408 HQVAVRQQEEFDPKKCWICGK 1428 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,907,926 Number of Sequences: 37544 Number of extensions: 287152 Number of successful extensions: 720 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 720 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1490248872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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