Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)                  29   4.0  
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_22839| Best HMM Match : DUF1290 (HMM E-Value=7.7)                   28   5.3  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  28   7.0  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  27   9.2  
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                27   9.2  

>SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +1

Query: 178 VMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 318
           ++E  K A   +++ + D G+ V    K ++KS+  ++ DSVKS+++
Sbjct: 86  LLEEWKKADVNLLREIRDVGNVVSKEIKDSKKSISKEIQDSVKSVSK 132


>SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
          Length = 347

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 70  IVSVEMDFRLLLLCCL-YIAVVAAAFPSETRNIEKRDVMESMKNAWNEVVKTL 225
           + S+ + + L L+C L YI V  A   +E R      +  S+ + W EVV+TL
Sbjct: 237 VTSMFLVYCLFLVCYLPYIIVQTAILVTELRLFSDPSIHSSL-SVWGEVVETL 288


>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 22  SLHFPKPIFFGAVVTLIVSVEMDFRLLLLCCLYIAVVAAAFPSET 156
           SL  P+ +    +  L  S  +   LLL  CLYI  + AA+PS +
Sbjct: 623 SLLRPEGVVLSDLRPLKSSPALPIALLLPVCLYIGTIRAAWPSSS 667


>SB_22839| Best HMM Match : DUF1290 (HMM E-Value=7.7)
          Length = 154

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 22  SLHFPKPIFFGAVVTLIVSVEMDFRLLLLCCLYIAVVAAAFPSET 156
           SL  P+ +    +  L  S  +   LLL  CLYI  + AA+PS +
Sbjct: 53  SLLRPEGVVLSDLRPLKSSPALPIALLLPVCLYIGTIRAAWPSSS 97


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 213 REDPKRCWRCGRS----RIQANRKECHR*NGR 296
           RED K C RCG S      +A  KEC + NG+
Sbjct: 306 REDRKTCGRCGSSHKPKECKAFGKECFKCNGK 337


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 213 REDPKRCWRCGRS----RIQANRKECHR*NGR 296
           RED K C RCG S      +A  KEC + NG+
Sbjct: 41  REDRKTCARCGSSHKPKECKAFGKECFKCNGK 72


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 127 VVAAAFPSETRNI-EKRDVMESMKNAWNEVVKTLSDAGDAV 246
           VV++  PSE  ++ EK DVM   + +  E VK + +  +A+
Sbjct: 409 VVSSELPSEVTDLLEKFDVMREKQTSLEEEVKAIRELAEAM 449


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 121  IAVVAAAFPSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADS 300
            +  +   F +  R +E   V +  K    EV++ L+ A   VVH+   ++ +  DK+  S
Sbjct: 829  VGKIRKVFFANKREVEFMCVCDINKEK-KEVIEDLNKAQGTVVHINATSKNAADDKLRQS 887

Query: 301  VKSLTQ 318
            ++   Q
Sbjct: 888  LRRFAQ 893


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,143
Number of Sequences: 59808
Number of extensions: 360930
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)