Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted ...    24   3.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.4  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   4.5  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   7.9  

>DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted
           polypeptide protein.
          Length = 125

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 57  RCHANCFC*NGF 92
           RC+A C+C +GF
Sbjct: 82  RCYAECYCASGF 93


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 300 TICHFIDDTLFCWLEYVNDRIASIA*GLHDFV 205
           T  +F DD++   L Y  DR+A I    H F+
Sbjct: 605 TSINFSDDSMID-LSYSEDRLADITVATHQFI 635


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 364 YCCCNYKVLKSIKPVIASSS*HYLPFYR*HSFLL 263
           YC   Y   +S  P+I +   H+L  Y  H F L
Sbjct: 746 YCKLMYNRERSYIPLIEAEPKHFLCSYNTHCFAL 779


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 88  DFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMESMKNAWNEVVKTL 225
           DF+ L+   LY+AV      + + +I  R V    +  W E  +TL
Sbjct: 720 DFQSLVGALLYVAVNTRPDIAISASILGRKVSNPCQADWTEAKRTL 765


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,434
Number of Sequences: 2352
Number of extensions: 11918
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)