Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 217 KTLSDAGDAVVHVFKPTEKSVIDKMADSVK 306
           KTL +A DA++   +PT+K++   + D  K
Sbjct: 226 KTLIEALDAILPPSRPTDKALRLPLQDVYK 255


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 227 LRVFTTSFQAFFMDSMTSRFSIFLVSDG 144
           L +FT SFQ +   ++ S  + F +  G
Sbjct: 374 LWIFTISFQKYMSGTLNSNETNFRIQAG 401


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +3

Query: 120 YRC--CGSSFSIRNEEYRET*CHGIHEECLERSREDPKRCWRCGRS 251
           Y+C  C  +F  +N        HG       +  EDP RC  CG++
Sbjct: 62  YQCLLCQKAFDQKNLYQSHLRSHG-------KEGEDPYRCNICGKT 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,123
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)