Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1307
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.3  
At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At1g56150.1 68414.m06450 auxin-responsive family protein similar...    28   4.3  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    28   5.7  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   10.0 

>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 320 YCVKLLTLSAILSMTLFSVGLNT*TTASPASLRVFTTSFQ 201
           +C+ +L    +L +TLFSV     ++ +  S +VFT  F+
Sbjct: 256 FCLPILICIVLLRLTLFSVRRTLVSSKTKESKKVFTLQFK 295


>At4g36680.1 68417.m05204 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat; identical to cDNA membrane-associated
           salt-inducible protein like GI:2632060
          Length = 412

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 127 VVAAAFPSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVHV-FKPTEKSVIDKMADSV 303
           V   AF +   ++ K+  +E   N WNE+VK   +  +A  +V     +K   +++ + +
Sbjct: 207 VTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESPERVKELI 266

Query: 304 KSLTQ*PV*LISTPYNY 354
           + ++   +   +  YNY
Sbjct: 267 EEMSSMGLKPDTISYNY 283


>At1g56150.1 68414.m06450 auxin-responsive family protein similar to
           SP:P33082 Auxin-induced protein X15. [Soybean] {Glycine
           max}
          Length = 110

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 208 RSKHSSWIP*HHVSLYSSFLMEKLL 134
           + KH SW+P  HV +Y    ME+ +
Sbjct: 31  KEKHKSWVPEGHVPVYVGHEMERFV 55


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 519 QTVHMRQQS*NIIAGEECVQKQLLPCIL 436
           +TVH+ +   N++ G E V+ QLLPC++
Sbjct: 404 ETVHLYE---NLLNGCEVVESQLLPCLI 428


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 73  VSVEMDFRLLLLCCLYI 123
           VSV   F L LLCCLY+
Sbjct: 72  VSVGFGFNLSLLCCLYV 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,565,621
Number of Sequences: 28952
Number of extensions: 249351
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)