Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1306
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 60 2e-09
02_04_0592 - 24171698-24172285 50 2e-06
07_01_1023 + 8840754-8842988,8843189-8843362 31 0.69
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 31 0.69
03_01_0608 + 4471738-4472115 29 2.8
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 3.7
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 29 4.8
10_01_0334 - 3680612-3681266,3682253-3682374 28 8.5
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525... 28 8.5
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +2
Query: 26 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 199
+K V N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
Query: 200 IEGTAKLTDDANKAAKLTVTF 262
IEGTA D + AKL V F
Sbjct: 61 IEGTAYRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 49.6 bits (113), Expect = 2e-06
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Frame = +2
Query: 23 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGV 190
E+ V ++ Y G WYEI+ PN + ++G+ + A Y L +G V V N G
Sbjct: 13 EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72
Query: 191 KKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSH 370
+ YI+GTA D A+ AKL V F V + DY + + +Y +
Sbjct: 73 RDYIKGTAYKADPASDEAKLKVKFYLPPFL---PVIPVVGDYWVLYVDDDYQYALVGEPR 129
Query: 371 QVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 493
+ +WIL R ++ + + KE +++ + D
Sbjct: 130 RKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQD 170
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 8 EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 181
EG C + + + NL G+W +++S N S K G C A D++ KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339
Query: 182 DGV 190
DGV
Sbjct: 340 DGV 342
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 35 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 151
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>03_01_0608 + 4471738-4472115
Length = 125
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 419 RRLQASCF*RGSRRTLDETFSCHRICSCKR 330
+RL+A+ RG ++ DE F C R+C+ KR
Sbjct: 32 QRLKAA---RGREKSSDEVFVCERVCTSKR 58
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 89 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 265
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 266 FGEISRDGSVQV 301
+GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 338 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 439
+CK D H + + N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 157 EGQERAYHRRRQEVYRRDGQAHRRRQ*SRKAN 252
EGQE+A RRR R+ QA R R+ KA+
Sbjct: 39 EGQEKATQRRRAARMRQRQQAARGREDGEKAS 70
>02_01_0704 -
5254458-5254760,5255091-5255182,5255285-5255501,
5255972-5256068,5256175-5256415,5257100-5257180,
5257236-5257383
Length = 392
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 498 QRKXXXXXXXXXXXXTENIKTEKILEALRGIKLNSNHSIKI 620
QRK TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,479,872
Number of Sequences: 37544
Number of extensions: 330492
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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