Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    29   0.040
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   8.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.1  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 0.040
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 513 SSNAFRFDGRGSRCNYTETLELISQGGWRI 602
           + N+ ++ G      Y E +EL  +GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 519 NAFRFDGRGSRCNYTETLELISQGGW 596
           +A R+ G      Y E +E  + GGW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 35  DLDEQYFHWNF 3
           DL+  YF+W+F
Sbjct: 314 DLERLYFYWSF 324


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 409 PVFPVGGVMKSEGI*VCRAAMPPCRMQTL 323
           P  PVG  +KS    V R + P C  Q +
Sbjct: 57  PCDPVGRRLKSLAPLVLRGSCPQCTPQEM 85


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/36 (19%), Positives = 16/36 (44%)
 Frame = +3

Query: 108 SNLLYEKSCIDGSVNVPYSGVHLGRHELRALGPQPE 215
           +N+   +  +    N P    + G H+   +GP+ +
Sbjct: 8   TNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQ 43


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/36 (19%), Positives = 16/36 (44%)
 Frame = +3

Query: 108 SNLLYEKSCIDGSVNVPYSGVHLGRHELRALGPQPE 215
           +N+   +  +    N P    + G H+   +GP+ +
Sbjct: 8   TNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQ 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,609
Number of Sequences: 336
Number of extensions: 2973
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)