Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1303
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 2.1
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.8
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 27 2.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 5.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 5.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 5.0
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 5.0
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 6.5
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 25 8.7
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 25 8.7
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 17 STVRRDLSQDKSVRFFLVDLRRQMLRRRYKVQSPLREKLHRRQCKRAV 160
S++ +D + + + ++D LR K S LRE+LH + +R +
Sbjct: 575 SSLDKDFQDEMAAKQSMIDSAYTQLRESTKKLSDLREQLHVSETQRTL 622
>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 6 IPMEVLFVEICPRISLSDFFSLICE--DKCCVVDIRSNLLYEKSCIDGSVNV 155
IP+ +LF CP I F CE C+ + + L++ + G N+
Sbjct: 37 IPLVLLFAFFCPCIYFLHTFLADCEIAKSTCITSVFNCLIFHMPNLSGDWNI 88
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 278 LVFGRGNNDVPLHLDGLLQGALGLRTESAELVP 180
L FG GN L LDG L+ A RT + E P
Sbjct: 134 LAFGGGNGRYSLWLDGSLEYAYSSRTPAFENNP 166
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 50 TYPGTDLDEQYFHWN 6
TY LDE Y HWN
Sbjct: 1607 TYLSNALDENYLHWN 1621
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 5 NSNGSTVRRDLSQDKSVRFFLVDLR 79
+S+ +T+ DL +DKS+R ++DL+
Sbjct: 160 DSSKATITLDLQKDKSLRKSIIDLK 184
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 383 HNTAHREHRKMNLINTKFKQPALLKKKQGKPRVGTTALPIS 505
+NT+ +H+K +KFKQ L KK G T++ +S
Sbjct: 303 NNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLS 343
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 498 LYLP*SSNAFRFDGRGSRC------NYTETLELISQGGW 596
++LP S FR+ R S C NY + + L ++G W
Sbjct: 250 IHLPASKYQFRYQNRVSNCQIEAWINYKDLISLPAEGQW 288
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 531 TETHYCFTADIGRAVVPTRG---LPCFFFRRAGCLNFVLIKFIFLCSRWAVL 385
T + F IGR++ P G + CF R G + +V+ F C ++ VL
Sbjct: 170 TSGNILFDWFIGRSLNPRIGNFDIKCFCELRPGLILWVVFDIAFACHQYLVL 221
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 159 YSGVHLGRHELRALGPQPERALQQAIKMKRNVVIASAED 275
Y GV GRH+L + + A +++ K KR+ +A ED
Sbjct: 128 YRGVIDGRHKLTGVIVKNPPAKKKSHKHKRDSPVAEEED 166
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 54 SDFFSLICEDKCCVVD 101
S+F S++C+DK VVD
Sbjct: 9 SEFKSIVCQDKLVVVD 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,632
Number of Sequences: 5004
Number of extensions: 48146
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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