Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    28   5.0  
11_06_0622 - 25600563-25600817,25601041-25601109,25601251-256014...    28   6.7  
02_04_0184 - 20737884-20738179,20738611-20739169,20740009-207404...    28   6.7  

>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 199 RARSSCRPRWTPLYGTFTLPSMQLFS 122
           RA  +  P+W  + G F++ SM+LF+
Sbjct: 66  RANPNASPKWQDVLGQFSMVSMELFN 91


>11_06_0622 -
           25600563-25600817,25601041-25601109,25601251-25601437,
           25601575-25601688,25603581-25603714,25603818-25604336
          Length = 425

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 116 EIGPYIDDAAFVFADQREKI*QT--YPGTDLDEQY 18
           EIGPY +D + +  +Q EK+ +T    G D  EQ+
Sbjct: 278 EIGPYFNDRSAITEEQSEKLAKTGNKVGDDATEQF 312


>02_04_0184 -
           20737884-20738179,20738611-20739169,20740009-20740440,
           20740556-20740957
          Length = 562

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 21  LFVEICPRISLSDFFSLICEDKCCVVDIR 107
           L + +C       F +L+C D CC++D R
Sbjct: 249 LILSLCLSEGFDTFPTLLCADGCCMIDRR 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,025,544
Number of Sequences: 37544
Number of extensions: 366663
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)