Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.078
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   6.8  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)                  27   9.0  

>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 135 IDGSVNVPYSGVHLGRHELRALGPQPERALQQAIKMKRNVVIASAEDETAQLFSDYLVKC 314
           I G+VN+P++       E   L   P  A     K K  V++ +  +  A++ ++ LV  
Sbjct: 586 ITGNVNIPFNQAFT---EDGTLAQSPAAATLATFKGKIVVIMGNKTNYPAKIAAE-LVDL 641

Query: 315 GVPRVCIL-HGGIAALQT 365
           G PRVC+L   GIA L++
Sbjct: 642 GYPRVCVLEEKGIAVLRS 659


>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
 Frame = -3

Query: 416 SFSCVPGGRCYEERRYMSLQSGDASVQNADSRYTAFH*IITEQLRGLVFGRGNNDVPLHL 237
           SF      R    RR   + + DA + N D   T     +   + G V G   + V   +
Sbjct: 57  SFEAFGRERRIRLRRNTGVFTSDAVILNGDG--TPLDIDMNSMVAGEVVGEPGSAVYGTM 114

Query: 236 -DGLLQGALGLRTESAELVPTEMDATVRHVYTAVYAAFLVKEIGPYID 96
            DG  QG +   TES  + P+E        ++ +Y +  V+  G Y D
Sbjct: 115 EDGKFQGKIQSNTESFYVEPSERYFDKPEFHSVIYRSEDVENKGNYAD 162


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/33 (27%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 24  FVEICP-RISLSDFFSLICEDKCCVVDIRSNLL 119
           ++++CP   S  DF+ ++ ++KC V+ + + L+
Sbjct: 737 YIKVCPLESSCDDFWQMVWQEKCSVIVMLTGLI 769


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 337  CTEASPLCKLIYLRSS*HRPPGTQENEFNQHEIQTASSPEKKTRQATGRYHRP 495
            C +    CK   L S   + P   + ++N     TAS+ ++KT  +T R ++P
Sbjct: 4459 CKKFVTSCKARGLLSGILKEPVVTDLKYNLRAEPTASAEKRKTSSSTARLNQP 4511


>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
          Length = 618

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 93  VVDIRSNLLYEKSCIDGSVNVPYSGVHL 176
           +++  +N+L   SC+D  V V  SGVHL
Sbjct: 351 LLEFENNMLPHVSCLDSVVFVCLSGVHL 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,099
Number of Sequences: 59808
Number of extensions: 394122
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)