Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding pr...    25   1.9  
AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding pr...    25   1.9  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    25   2.5  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   7.7  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   7.7  

>AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding
           protein AgamOBP31 protein.
          Length = 313

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 69  LICEDKCCVVDI-RSNLLYEKSCIDGSVNV--PYSGVHLGRHELRALGPQPERALQQAIK 239
           L C  K  + D+  +  LY   CID    +    SG+HL R  +R L     R L +  K
Sbjct: 173 LQCYSKGDLPDVPETRCLYH--CIDHRTGLYTTESGIHLSRFYVRDLEVNDLRYLSKETK 230

Query: 240 MKRNVVIASAEDETAQLFSDY 302
             R+ V  S  D  +++++ +
Sbjct: 231 ACRDRVRMSGCDVCSEVYNTH 251


>AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding
           protein 1 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 69  LICEDKCCVVDI-RSNLLYEKSCIDGSVNV--PYSGVHLGRHELRALGPQPERALQQAIK 239
           L C  K  + D+  +  LY   CID    +    SG+HL R  +R L     R L +  K
Sbjct: 173 LQCYSKGDLPDVPETRCLYH--CIDHRTGLYTTESGIHLSRFYVRDLEVNDLRYLSKETK 230

Query: 240 MKRNVVIASAEDETAQLFSDY 302
             R+ V  S  D  +++++ +
Sbjct: 231 ACRDRVRMSGCDVCSEVYNTH 251


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 480 TRGLPCFFFRRAG 442
           +R +PCFF+R AG
Sbjct: 119 SRSIPCFFWRSAG 131


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 364 LIYLRSS*HRPPGTQENEFNQHEIQTASSPEKKTRQATGRYHR 492
           ++Y RS+  R  G +E E  Q  I    + ++K + ATG Y R
Sbjct: 171 VMYWRSTPIR--GVEEAELPQFTIIGYETNDRKEKLATGIYQR 211


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 MKRNVVIASAEDETAQLFSDYLVKCGV 320
           ++ NV +A   +   +   D L+KC V
Sbjct: 166 LRSNVTVADGSENRVEGVGDCLIKCAV 192


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,846
Number of Sequences: 2352
Number of extensions: 12462
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)