Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-691|AAF45995.3|  840|Drosophila melanogaster CG4041-PA ...    58   1e-08
AY071630-1|AAL49252.1|  369|Drosophila melanogaster RE67616p pro...    28   8.7  
AE014134-3022|AAF53745.2|  369|Drosophila melanogaster CG15173-P...    28   8.7  

>AE014298-691|AAF45995.3|  840|Drosophila melanogaster CG4041-PA
            protein.
          Length = 840

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
 Frame = +3

Query: 3    EIPMEVLFVEICPRISLSDFFSLICED--KCCVVDIRSNLLYEKSCIDGSVNVPYSGVHL 176
            ++ ++ L  E CPRIS  D   L+     +  ++D+RS + + +  +  S+N+P++ V L
Sbjct: 692  DVELKHLQQEQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPHSINIPFATVQL 751

Query: 177  GRHELRALG-PQPERALQ-QAIKMKRNVVIASAE--DETAQL-------------FSDYL 305
            G   L AL  PQ E  L+ + +    N+   S E     AQL             FS +L
Sbjct: 752  GEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEVGHPLAQLKLLCKLKSFPISQFSHFL 811

Query: 306  VKCGVPRVCILHGGIAALQTHIPSLFIT 389
            V CGV R CILH G   L +  P++ I+
Sbjct: 812  VACGVQRTCILHKGFNVLHSIEPNILIS 839


>AY071630-1|AAL49252.1|  369|Drosophila melanogaster RE67616p
           protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 316 VYLESAFCTEASPLCKLIYLRSS*HR-PPGTQENEFNQHEIQTASSPEKK 462
           VYL     ++A   C+L +     H+ P   ++ E+  +EI+T  + EK+
Sbjct: 319 VYLREGLMSQAENACRLAWKLGKQHQNPDAVEQAEYCLNEIKTTLNGEKR 368


>AE014134-3022|AAF53745.2|  369|Drosophila melanogaster CG15173-PA
           protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 316 VYLESAFCTEASPLCKLIYLRSS*HR-PPGTQENEFNQHEIQTASSPEKK 462
           VYL     ++A   C+L +     H+ P   ++ E+  +EI+T  + EK+
Sbjct: 319 VYLREGLMSQAENACRLAWKLGKQHQNPDAVEQAEYCLNEIKTTLNGEKR 368


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,801,002
Number of Sequences: 53049
Number of extensions: 586128
Number of successful extensions: 1607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)