Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      30   1.5  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.5  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.5  
U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 5   NSNGSTVRRDLSQDKSVRFFLVDLRRQMLR----RRYKVQSPLREKLHR 139
           N NG+    DL  D  +R  +VDL+RQ L      R K    L EKLH+
Sbjct: 17  NGNGTNTFDDLYVDDKMRRMIVDLQRQWLTDYHDSREKSLVALTEKLHQ 65


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
            protein C33F10.2 protein.
          Length = 826

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 29/119 (24%), Positives = 46/119 (38%)
 Frame = +3

Query: 36   CPRISLSDFFSLICEDKCCVVDIRSNLLYEKSCIDGSVNVPYSGVHLGRHELRALGPQPE 215
            CPR+S  +    I      V+D R    ++      S N P +        LR L   P 
Sbjct: 715  CPRMSSEELIWRIERKMVYVLDTRQESEFQSERFSDSFNHPNNNHEADIDWLRFL---PG 771

Query: 216  RALQQAIKMKRNVVIASAEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITP 392
                +  K     V    + E A+  ++  V  GVP +C+LH    A++    S+ + P
Sbjct: 772  IVCSELPKC---FVYGKNDKEAAERLTEAYVMKGVPYICLLHDHFEAVRNR-DSVVVKP 826


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 267 AEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITPPTGNTGK 413
           A+ +T +L + + +  G+P  C        L  H+    + PPT  T K
Sbjct: 67  ADPKTTELMARFFISQGIPFECAHEPAFLELMKHVDPNCVIPPTNVTKK 115


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 267 AEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITPPTGNTGK 413
           A+ +T +L + + +  G+P  C        L  H+    + PPT  T K
Sbjct: 67  ADPKTTELMARFFISQGIPFECAHEPAFLELMKHVDPNCVIPPTNVTKK 115


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 267 AEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITPPTGNTGK 413
           A+ +T +L + + +  G+P  C        L  H+    + PPT  T K
Sbjct: 67  ADPKTTELMARFFISQGIPFECAHEPAFLELMKHVDPNCVIPPTNVTKK 115


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 267 AEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITPPTGNTGK 413
           A+ +T +L + + +  G+P  C        L  H+    + PPT  T K
Sbjct: 67  ADPKTTELMARFFISQGIPFECAHEPAFLELMKHVDPNCVIPPTNVTKK 115


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 267 AEDETAQLFSDYLVKCGVPRVCILHGGIAALQTHIPSLFITPPTGNTGK 413
           A+ +T +L + + +  G+P  C        L  H+    + PPT  T K
Sbjct: 67  ADPKTTELMARFFISQGIPFECAHEPAFLELMKHVDPNCVIPPTNVTKK 115


>U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical
           protein AH9.6 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 135 IDGSVN----VPYSGVHLGRHELRALGPQPERALQQAIKMKRNV--VIASAEDETAQLFS 296
           IDG VN    +PY  +H G H LR L P  +  +  A+     +  VI    D+      
Sbjct: 142 IDGVVNDARKIPYVRLHTGSHRLRMLLPNIQSEVNNALVQGWPLAKVIEDLVDDVGYALK 201

Query: 297 DY 302
           DY
Sbjct: 202 DY 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,300
Number of Sequences: 27780
Number of extensions: 292207
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)