Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.77 
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   3.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 2   RNSNGSTVRRDLSQDKSVRFFLVDLRRQMLRRRYKVQSPLREKLHRRQCKRAVQW 166
           RN N   ++R ++ D+      +  +R   R R   Q+  +  +HR++   +V W
Sbjct: 18  RNENDPFLKRPITGDEKWVVNNIKRKRWWSRPREPAQTTSKAGIHRKKVLLSVWW 72


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 270 EDETAQLFSDYLVK 311
           EDE  QLFS+ L+K
Sbjct: 55  EDEKVQLFSECLIK 68


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 280 VSSSAEAITTFLFILMACCKARSG*GPRARSSC 182
           V SS   + ++++ILMA  +  +  G R  S+C
Sbjct: 88  VFSSPTILISYIYILMAILRMSADGGCRNFSTC 120


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 400 GTQENEFNQHEIQTASSPEKKTRQATGRYHR 492
           G +E E  Q  I    + ++K + ATG Y R
Sbjct: 200 GVEEAELPQFTIIGYETNDRKEKLATGIYQR 230


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 RNVVIASAEDETAQLFSDYLVK 311
           RN +I   E+E  QLFS+ L+K
Sbjct: 48  RNGII-DVENEKVQLFSECLIK 68


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = -2

Query: 561 YNYNGCPAHQTETHYCFT---ADIG--RAVVPTRGLPC 463
           ++   CPAH   + Y FT    D G  RA    + +PC
Sbjct: 277 HSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPC 314


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 409 PVFPVGGVMKSEGI*VCRAAMPPC 338
           P  PVG  +KS    V R A P C
Sbjct: 60  PCDPVGRRLKSLAPLVLRGACPQC 83


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 198 LGPQPERALQQAIKMKRNVVIASAEDET 281
           L P P   L+Q  + + N ++  A D+T
Sbjct: 186 LEPTPGNTLRQTFENQVNRILNDARDKT 213


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 409 PVFPVGGVMKSEGI*VCRAAMPPC 338
           P  PVG  +KS    V R A P C
Sbjct: 60  PCDPVGRRLKSLAPLVLRGACPQC 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,742
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)