Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1303
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43240.1 68415.m05374 nucleotide-sugar transporter family pro...    28   4.2  
At4g34860.1 68417.m04945 beta-fructofuranosidase, putative / inv...    28   5.6  
At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT...    27   7.4  

>At2g43240.1 68415.m05374 nucleotide-sugar transporter family
           protein weak similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 787

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -3

Query: 413 FSCVPG--GRCYEERRYMSLQSGDASVQNADSRYTAFH--*IITEQLRGLVFGRGNNDVP 246
           FS VP     CY E    S  SGD      D+  + FH   I   QLR L  G     VP
Sbjct: 126 FSAVPAIFQSCYCEDAQQSKSSGDCCTTEDDNEASVFHHTGISINQLRSLPEGATTVAVP 185

Query: 245 L 243
           +
Sbjct: 186 I 186


>At4g34860.1 68417.m04945 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 571

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 21  LFVEICPRISLSDFFSLICEDKCCVVDIR 107
           L + +C       F +L+C D CC++D R
Sbjct: 258 LILSLCLSEGFDTFPTLLCADGCCMIDRR 286


>At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT-3)
           identical to homocysteine S-methyltransferase HMT-3
           [Arabidopsis thaliana] GI:9966515; similar to
           homocysteine S-methyltransferase AtHMT-2 (GI:6685163)
           [Arabidopsis thaliana]; similar to selenocysteine
           methyltransferase GB:P56707 from [Astragalus bisulcatus]
          Length = 347

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 EDETAQLFSDYLVKCGVPRVCILHGGIAA-LQTH 368
           ++ET+ L +D+L KCG     ++ GG A  LQ H
Sbjct: 6   KEETSSLMTDFLEKCG--GYAVVDGGFATELQRH 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,731
Number of Sequences: 28952
Number of extensions: 271975
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)