Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1302
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 345 4e-96
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 191 6e-50
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 188 6e-49
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 141 9e-35
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.080
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.43
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 4.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.2
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 5.2
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 6.9
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 25 6.9
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 6.9
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 6.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 345 bits (847), Expect = 4e-96
Identities = 157/211 (74%), Positives = 184/211 (87%)
Frame = +3
Query: 3 MGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 182
MGTLL+SKIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEA
Sbjct: 147 MGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEA 206
Query: 183 LYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFF 362
L I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFF
Sbjct: 207 LSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFF 266
Query: 363 MPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 542
M GFAPL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEV
Sbjct: 267 MVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEV 326
Query: 543 DEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 635
DEQ+ ++Q KNS+YFVEWIP+NV AVC +P
Sbjct: 327 DEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 191 bits (466), Expect = 6e-50
Identities = 82/211 (38%), Positives = 131/211 (62%)
Frame = +3
Query: 3 MGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 182
+G LL+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA
Sbjct: 153 LGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEA 212
Query: 183 LYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFF 362
YDIC R L + PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF
Sbjct: 213 CYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFP 272
Query: 363 MPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 542
+ ++P+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V
Sbjct: 273 LVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDV 332
Query: 543 DEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 635
+ +I+++ + FV+W P K +C P
Sbjct: 333 QAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 188 bits (458), Expect = 6e-49
Identities = 82/210 (39%), Positives = 127/210 (60%)
Frame = +3
Query: 6 GTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 185
G LL+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+
Sbjct: 150 GALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESC 209
Query: 186 YDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFM 365
YDIC R L + P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF +
Sbjct: 210 YDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPL 269
Query: 366 PGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVD 545
+AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V
Sbjct: 270 VTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQ 329
Query: 546 EQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 635
+ I+ K + FV+W P K +CD P
Sbjct: 330 AAVTTIKAKRTIQFVDWCPTGFKIGICDRP 359
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 141 bits (341), Expect = 9e-35
Identities = 69/212 (32%), Positives = 121/212 (57%), Gaps = 5/212 (2%)
Frame = +3
Query: 3 MGTLLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 179
+G+ L+ ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN
Sbjct: 149 LGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNA 208
Query: 180 ALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 359
AL I L PT+ N LVS MS TT LR+PG +N DL + +++P PR HF
Sbjct: 209 ALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHF 268
Query: 360 FMPGFAPLTSRGSRQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRM 527
+ + P T++ + +A+ TV ++ +++ KN M + +P + ++++ I +G
Sbjct: 269 LLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEA 328
Query: 528 SMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 623
+V + +L I+ + + F+ W P +++ A+
Sbjct: 329 DPADVHKSLLRIRERRYASFIPWGPASIQVAL 360
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.080
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 5/151 (3%)
Frame = +1
Query: 13 SSSQRSVKSTPTE-S*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYT 189
S+S S+ PT S T T SP P T + T + +S L T PT T +
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPT---S 255
Query: 190 TSASALSNCPHPPTVTLTT*FPSQCLVLPLALGSPVS*TLI----SENWP*TWFPSHVST 357
TS++++ P PPT T +T + LP S + T I + P T ST
Sbjct: 256 TSSTSI---PIPPTSTSST--DTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310
Query: 358 SSCQVSLPSHPVEADSTVP*LYPSSRNRCST 450
SS P + T PS+ C+T
Sbjct: 311 SSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 148 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 246
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.3
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Frame = +1
Query: 13 SSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTT 192
SSS S S+P+ S + T S ++ S + S +S + + TAS++ ++
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271
Query: 193 SASALSNCPHPPTVTLTT*FPSQCLVLPLALGSPVS*TLISENWP*TWFPSHVSTS--SC 366
S+ S+ PT T +T S + + S T+ S + + F S +S+S S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSS---SSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSS 328
Query: 367 QVSLPSHPVEADSTV 411
S S P + ST+
Sbjct: 329 SSSFSSSPTSSSSTI 343
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 135 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 314
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 315 RKLAVNMV 338
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 595 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 497
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +1
Query: 13 SSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTT 192
SSS S S+ + S + + S P + SS+H+ S +S + ++P++S++ + T
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSSSFITTM 244
Query: 193 SAS 201
S+S
Sbjct: 245 SSS 247
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 489 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 614
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 489 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 605
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = -1
Query: 446 EHLLRELGYSQGTVLSASTGCEGSETWHEEVETWE 342
E L + + G + G + WH+ ETWE
Sbjct: 3 EDLFVSINFPNGKSVKQPIGLYINGEWHKSAETWE 37
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 124 RVALYGSTTVSDTLGEGTTEYVFMILSGYSSRIFEMRR 11
R+A+ + + D EY+ ++ GY R+ E RR
Sbjct: 242 RLAIDAFSALRDLSANRFPEYLLLVAGGYDIRVSENRR 279
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 82 PKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPH 222
PK T H +S T +K+ S+TRL + S S PH
Sbjct: 664 PKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYEPSVSSAYPH 710
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 150 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 254
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,273
Number of Sequences: 5004
Number of extensions: 54914
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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