Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1302
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 331 TWFPSHVSTSSCQVSLPSHPVEADSTV 411
           +W P  +  SSC++++   P +  S +
Sbjct: 147 SWKPPAIYKSSCEINVEYFPFDEQSCI 173


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 147 FQLAGELRESHCM 109
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 47  QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 181
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 383 EGSETWHEEVETWEGNHVYGQFSEISVQLTGEPKASGNT 267
           +GS T H E+E     H+     ++ V +   P+ S +T
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHT 85


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +1

Query: 307 LISENWP*TWFPSHVSTSSCQVSLPSHPVEADSTV 411
           LI  N    W P  +  SSC + +   P +  + +
Sbjct: 132 LIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCI 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,108
Number of Sequences: 438
Number of extensions: 3829
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)