Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1300
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    55   5e-09
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   0.71 
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    27   1.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.8  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   5.0  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   6.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   6.6  
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    25   6.6  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.7  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 20/64 (31%), Positives = 40/64 (62%)
 Frame = +1

Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
           ++GT  G ++P   N+  ++L++R  W++G AG ++  L++       + T++S+SAI T
Sbjct: 76  KLGTFEGCFIPTTLNVLSILLYLRFPWIIGEAGVLKTLLMLFISYAVGIFTSLSISAICT 135

Query: 496 RGVV 507
            G+V
Sbjct: 136 NGMV 139


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 224 PRSSAR*RTMRIQSPRHPPQTQMPPSQPHQPAWARSS 334
           P+S A   T+ +  P +   T  P   P +P ++RSS
Sbjct: 406 PQSDANDSTVNLNQPNYANLTPTPQVSPKRPTYSRSS 442


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 258 YNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWR 416
           Y P+ + RRP+CP+   T       R +P+L+       L    HL   H W+
Sbjct: 129 YLPNQVIRRPKCPKPGSTL----YERFIPSLNETLSFVSLDIEQHLQYFHEWQ 177


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 180 LYALSRRDRGPT*SSHVPQLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPA 347
           LY    + R    S  +P    G+   N H   R+   P  SP +P G+A++  PA
Sbjct: 134 LYQRQMQSREALLSQQIPPNQIGI---NAHPAVRQTPQPAPSPNTPSGNANQLTPA 186


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 1   GAPSVSDKSVLQWLPKKKKWQRPKRSRHPTKATAPHLERKVTPTNMALP 147
           G  ++  K + + + ++ + Q      H  +AT PH  R + P N+  P
Sbjct: 625 GRDNIEKKGIFRTVSQRHRRQLSSLM-HQLEATQPHFVRCIIPNNLKQP 672


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  SVTSPFYNGFRKRKNGSGRNEVAI 85
           S +S  +N F KR NG   NE+A+
Sbjct: 29  SSSSSSFNYFDKRTNGKANNELAL 52


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 402 RHRWRYTRIPHCSNLLLYDDVNRNINVC 485
           R R      P CSNL+ ++ +N++++ C
Sbjct: 151 RKREDLVHCPACSNLVPHNQINQHLDSC 178


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 303 SPTSPHGHAHRRVPALHPEYLR 368
           S T PH  A   VP  HPEY R
Sbjct: 137 SSTKPH--AQNAVPTFHPEYGR 156


>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 336 ADERAHAGWWGWLGG 292
           A  + + GWWG LGG
Sbjct: 5   AGGKTYLGWWGHLGG 19


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 417 YTRIPHCSNLLLYDDVNRNINVCHRNEGR 503
           Y  + HCSN+ L  D N    V  R+  R
Sbjct: 367 YAELLHCSNMSLLSDPNGEAMVMQRDHLR 395


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 267 HGIRRRPRCPQASPTSPHGHAHRRVPALHPEYL 365
           +G  ++ + P + PT+ H  + + +P+   EYL
Sbjct: 531 YGTMKKLKIPFSIPTNVHYSSEKDIPSYSQEYL 563


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 378 IHPAHLGCRHRWRYTRIPHCSNLLLYDDVNRNINVCHRN 494
           + PA  GC+  W Y  + H      + +V RNI+   R+
Sbjct: 543 LSPAQRGCQDSWNY--LDHFDIASAHRNVYRNIHSIRRH 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,279
Number of Sequences: 5004
Number of extensions: 43479
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)