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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1300
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    79   2e-15
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    76   2e-14
11_06_0743 + 26847652-26849424                                         33   0.10 
12_02_0106 + 13654686-13655789                                         29   2.2  
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557...    29   2.9  
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404...    28   3.8  
08_02_1355 + 26343939-26345054                                         28   5.0  
07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103     28   5.0  
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388...    27   6.6  
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197...    27   6.6  
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778...    27   6.6  
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89...    27   6.6  
12_01_0253 + 1883731-1884011,1884810-1884852                           27   8.8  
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583...    27   8.8  
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    27   8.8  
07_01_1127 + 10456895-10457388,10457488-10458112                       27   8.8  
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048           27   8.8  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    27   8.8  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = +1

Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
           + GT++GV++PC+QNI G+I +IR TW+VG AG  Q  ++V  C   T LT IS+SAIAT
Sbjct: 58  KFGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIAT 117

Query: 496 RGVV 507
            G +
Sbjct: 118 NGAM 121


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 31/64 (48%), Positives = 45/64 (70%)
 Frame = +1

Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
           ++ T++GV++PC+QNI G+I +IR TW+VG  G  Q  ++V  C   T LT IS+SAIAT
Sbjct: 64  KLDTMMGVFVPCLQNILGIIYYIRFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIAT 123

Query: 496 RGVV 507
            G +
Sbjct: 124 NGAM 127


>11_06_0743 + 26847652-26849424
          Length = 590

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 224 PRSSAR*RTMRIQSPRHP----PQTQMPPSQPHQPAWARSSACT 343
           P  SAR R  R   PRHP    P T  PP +P +   ARS  C+
Sbjct: 264 PGRSARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRRARSGRCS 307


>12_02_0106 + 13654686-13655789
          Length = 367

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 221 QPRSSAR*RTMRIQSPRHPPQTQMPP-SQPHQPAWARS 331
           +P +SA  R  R  +P HPP   +PP S P  PA A +
Sbjct: 11  KPTASAH-RQYRYWAPPHPPAAALPPHSAPSPPASAEA 47


>05_03_0502 -
           14754532-14754851,14754959-14755042,14755553-14755709,
           14756198-14756638,14757590-14757808,14757873-14758193
          Length = 513

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  KRSRHPTKATAPHLERKVTPTNMALP 147
           K+ +   + + P LER V PTN ALP
Sbjct: 6   KKRKREVEVSHPALERAVVPTNSALP 31


>09_02_0081 -
           4041364-4041555,4041830-4041911,4042192-4042443,
           4042529-4044001,4044222-4044733,4044824-4045021
          Length = 902

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 263 SPRHPPQTQMPPSQPHQ 313
           SPRHPP+   PP  P Q
Sbjct: 504 SPRHPPRQPTPPPSPSQ 520


>08_02_1355 + 26343939-26345054
          Length = 371

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 354 DARQVHADERAHAGWWGWLGGIWVCGGCRG 265
           D    H  E  H G+    GG+ VC GC G
Sbjct: 89  DGNDGHRLEDCHLGFLPERGGVVVCDGCNG 118


>07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103
          Length = 267

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 64  RPKRSRHPTKATAPHLERKVTPTNMALPTAQAIKAATLTFMLYH 195
           R +R R P  A        +TP + AL       A  LTFM+ H
Sbjct: 157 RLRRRRRPAAADRWRRRSSITPCSNALVAGHDTSAILLTFMVRH 200


>09_04_0515 +
           18238434-18238545,18238659-18238709,18238844-18238897,
           18239727-18239777,18239845-18239895,18240056-18240210,
           18240550-18240663,18240873-18240938,18241478-18241561,
           18241640-18241726,18241975-18242066,18242163-18242223,
           18242475-18242531,18243129-18243220,18243394-18243584,
           18244203-18244321,18244518-18244589,18244699-18244784,
           18244866-18244962,18245488-18245622
          Length = 608

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 224 PRSSAR*RTMRIQSPRHPPQ----TQMPPSQPHQP 316
           PRS+ R RT +  SP  PP+    T++P   P  P
Sbjct: 51  PRSAGRGRTWKRDSPEAPPRRSGITRVPNRSPEMP 85


>07_03_0910 -
           22519006-22519159,22519300-22519355,22519433-22519702,
           22519808-22519986,22520146-22520374,22520985-22521180,
           22521728-22521818,22521921-22521975,22522812-22522902,
           22523366-22523424,22524000-22524050
          Length = 476

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +3

Query: 96  NCASPGKKGDPDEHGTTHGTS-NKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNPHG 272
           N +S    G  DE  +   TS N+G      +  +    P   S +  + S      PH 
Sbjct: 126 NGSSRPSSGARDEKSSESQTSVNRGGHNQRSSFEQHRTSPAAVSKIAPVVSRTPTQAPHQ 185

Query: 273 IRRRPRCPQASPTSP 317
            + +P  P+ SP  P
Sbjct: 186 PKAQPSVPKVSPPQP 200


>05_03_0468 +
           14376926-14377183,14377534-14377710,14377802-14377867,
           14378009-14378134,14378499-14378678,14379015-14379179,
           14380185-14380538
          Length = 441

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 276 RRRPRCPQASPTSPHGHAHRRVPALHP 356
           RR+P+ PQ  P+  H H H   P++ P
Sbjct: 4   RRKPQPPQTPPSLDH-HHHHHTPSVGP 29


>02_01_0121 +
           890391-890429,890565-890730,891209-891769,892365-892845,
           892952-893033,893818-894021
          Length = 510

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 61  QRPKRSRHPTKATAPHLERKVTPTNMALPTA 153
           Q P R+  P +AT+P   R  TP     P A
Sbjct: 298 QEPSRTGTPVRATSPDCSRPTTPRKTIGPNA 328


>12_01_0253 + 1883731-1884011,1884810-1884852
          Length = 107

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  VSDKSVLQWLPKKKKWQRPKRSRHPTKATAPHL 111
           VSD  VL+WLP +++W       H +    PH+
Sbjct: 67  VSDGRVLKWLPLERRW-----VEHSSAVIEPHM 94


>11_05_0075 +
           18856659-18856878,18856890-18857107,18858253-18858319,
           18858706-18859397
          Length = 398

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
 Frame = -2

Query: 372 HTEDILDARQVHADERAHAGWWG-WLGGIWV----CGGCRGDCIRIVR*RAEER 226
           H   I        D    AGWWG W   +W+     GG      R VR RA  R
Sbjct: 152 HDLGISSTEDSQLDSEKLAGWWGAWRSPVWLGVKRAGGRAVAVSRWVRLRASRR 205


>10_06_0099 -
           10677024-10677073,10677894-10677998,10678254-10678315,
           10678694-10679197,10679695-10680356,10680695-10680793,
           10680881-10681110,10681227-10681278,10681391-10681577,
           10681661-10681873,10682006-10682175,10683455-10683730,
           10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 348 RQVHADERAHAGWWGWLGGIWVCGGCRGDC 259
           +  HA   A AG+ G L  +W  GGC   C
Sbjct: 19  KAAHAGAGAVAGFLGCLLLVWAMGGCGRGC 48


>07_01_1127 + 10456895-10457388,10457488-10458112
          Length = 372

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 23/78 (29%), Positives = 30/78 (38%)
 Frame = +3

Query: 87  NKSNCASPGKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNP 266
           N SNC S         +GTT    +K     +   S+ DR  T SS    L    C+   
Sbjct: 266 NPSNCDSKKDSNGDSNYGTTDANVSKDFQPPIPTPSQNDRPQTDSSAKKTLICYNCKEPG 325

Query: 267 HGIRRRPRCPQASPTSPH 320
           H  R   +  Q+ P  PH
Sbjct: 326 HYSRDCLQPRQSRP--PH 341


>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
          Length = 378

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 182 LCSITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQP 307
           L +++ RSR   E  RS      + + SP  PP  Q PP++P
Sbjct: 199 LHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQ-PPAKP 239


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 234 QLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDL--IHPAHLGCRH 407
           QLA   C+ +  G+  R              AH  + + H + L+C +  IHP+     H
Sbjct: 218 QLAEAACQSSTRGVELRASASALKRLGDGPRAHSLLLSAHNQRLQCSMQTIHPS--STSH 275

Query: 408 RWRYT 422
              YT
Sbjct: 276 SGAYT 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,117
Number of Sequences: 37544
Number of extensions: 353805
Number of successful extensions: 1832
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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