BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1300 (511 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 79 2e-15 01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 76 2e-14 11_06_0743 + 26847652-26849424 33 0.10 12_02_0106 + 13654686-13655789 29 2.2 05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557... 29 2.9 09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 28 3.8 08_02_1355 + 26343939-26345054 28 5.0 07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103 28 5.0 09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 27 6.6 07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 27 6.6 05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 27 6.6 02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 27 6.6 12_01_0253 + 1883731-1884011,1884810-1884852 27 8.8 11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583... 27 8.8 10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 27 8.8 07_01_1127 + 10456895-10457388,10457488-10458112 27 8.8 05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 27 8.8 03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 27 8.8 >08_02_0200 - 14179389-14180488,14180575-14180736,14180983-14181383, 14182078-14182272,14182980-14183094,14183180-14183428, 14184032-14184093,14184335-14184435,14184701-14184815, 14185211-14185302,14187619-14187777 Length = 916 Score = 79.4 bits (187), Expect = 2e-15 Identities = 33/64 (51%), Positives = 46/64 (71%) Frame = +1 Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495 + GT++GV++PC+QNI G+I +IR TW+VG AG Q ++V C T LT IS+SAIAT Sbjct: 58 KFGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIAT 117 Query: 496 RGVV 507 G + Sbjct: 118 NGAM 121 >01_02_0116 - 11252220-11253313,11253398-11253559,11253977-11254306, 11254328-11254377,11255195-11255389,11255532-11255625, 11255713-11255961,11256831-11256892,11257434-11257534, 11257766-11257880,11258384-11258475,11259197-11259333, 11259721-11259760 Length = 906 Score = 75.8 bits (178), Expect = 2e-14 Identities = 31/64 (48%), Positives = 45/64 (70%) Frame = +1 Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495 ++ T++GV++PC+QNI G+I +IR TW+VG G Q ++V C T LT IS+SAIAT Sbjct: 64 KLDTMMGVFVPCLQNILGIIYYIRFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIAT 123 Query: 496 RGVV 507 G + Sbjct: 124 NGAM 127 >11_06_0743 + 26847652-26849424 Length = 590 Score = 33.5 bits (73), Expect = 0.10 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +2 Query: 224 PRSSAR*RTMRIQSPRHP----PQTQMPPSQPHQPAWARSSACT 343 P SAR R R PRHP P T PP +P + ARS C+ Sbjct: 264 PGRSARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRRARSGRCS 307 >12_02_0106 + 13654686-13655789 Length = 367 Score = 29.1 bits (62), Expect = 2.2 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 221 QPRSSAR*RTMRIQSPRHPPQTQMPP-SQPHQPAWARS 331 +P +SA R R +P HPP +PP S P PA A + Sbjct: 11 KPTASAH-RQYRYWAPPHPPAAALPPHSAPSPPASAEA 47 >05_03_0502 - 14754532-14754851,14754959-14755042,14755553-14755709, 14756198-14756638,14757590-14757808,14757873-14758193 Length = 513 Score = 28.7 bits (61), Expect = 2.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 70 KRSRHPTKATAPHLERKVTPTNMALP 147 K+ + + + P LER V PTN ALP Sbjct: 6 KKRKREVEVSHPALERAVVPTNSALP 31 >09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443, 4042529-4044001,4044222-4044733,4044824-4045021 Length = 902 Score = 28.3 bits (60), Expect = 3.8 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +2 Query: 263 SPRHPPQTQMPPSQPHQ 313 SPRHPP+ PP P Q Sbjct: 504 SPRHPPRQPTPPPSPSQ 520 >08_02_1355 + 26343939-26345054 Length = 371 Score = 27.9 bits (59), Expect = 5.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -2 Query: 354 DARQVHADERAHAGWWGWLGGIWVCGGCRG 265 D H E H G+ GG+ VC GC G Sbjct: 89 DGNDGHRLEDCHLGFLPERGGVVVCDGCNG 118 >07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103 Length = 267 Score = 27.9 bits (59), Expect = 5.0 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +1 Query: 64 RPKRSRHPTKATAPHLERKVTPTNMALPTAQAIKAATLTFMLYH 195 R +R R P A +TP + AL A LTFM+ H Sbjct: 157 RLRRRRRPAAADRWRRRSSITPCSNALVAGHDTSAILLTFMVRH 200 >09_04_0515 + 18238434-18238545,18238659-18238709,18238844-18238897, 18239727-18239777,18239845-18239895,18240056-18240210, 18240550-18240663,18240873-18240938,18241478-18241561, 18241640-18241726,18241975-18242066,18242163-18242223, 18242475-18242531,18243129-18243220,18243394-18243584, 18244203-18244321,18244518-18244589,18244699-18244784, 18244866-18244962,18245488-18245622 Length = 608 Score = 27.5 bits (58), Expect = 6.6 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +2 Query: 224 PRSSAR*RTMRIQSPRHPPQ----TQMPPSQPHQP 316 PRS+ R RT + SP PP+ T++P P P Sbjct: 51 PRSAGRGRTWKRDSPEAPPRRSGITRVPNRSPEMP 85 >07_03_0910 - 22519006-22519159,22519300-22519355,22519433-22519702, 22519808-22519986,22520146-22520374,22520985-22521180, 22521728-22521818,22521921-22521975,22522812-22522902, 22523366-22523424,22524000-22524050 Length = 476 Score = 27.5 bits (58), Expect = 6.6 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Frame = +3 Query: 96 NCASPGKKGDPDEHGTTHGTS-NKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNPHG 272 N +S G DE + TS N+G + + P S + + S PH Sbjct: 126 NGSSRPSSGARDEKSSESQTSVNRGGHNQRSSFEQHRTSPAAVSKIAPVVSRTPTQAPHQ 185 Query: 273 IRRRPRCPQASPTSP 317 + +P P+ SP P Sbjct: 186 PKAQPSVPKVSPPQP 200 >05_03_0468 + 14376926-14377183,14377534-14377710,14377802-14377867, 14378009-14378134,14378499-14378678,14379015-14379179, 14380185-14380538 Length = 441 Score = 27.5 bits (58), Expect = 6.6 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 276 RRRPRCPQASPTSPHGHAHRRVPALHP 356 RR+P+ PQ P+ H H H P++ P Sbjct: 4 RRKPQPPQTPPSLDH-HHHHHTPSVGP 29 >02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-892845, 892952-893033,893818-894021 Length = 510 Score = 27.5 bits (58), Expect = 6.6 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +1 Query: 61 QRPKRSRHPTKATAPHLERKVTPTNMALPTA 153 Q P R+ P +AT+P R TP P A Sbjct: 298 QEPSRTGTPVRATSPDCSRPTTPRKTIGPNA 328 >12_01_0253 + 1883731-1884011,1884810-1884852 Length = 107 Score = 27.1 bits (57), Expect = 8.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 13 VSDKSVLQWLPKKKKWQRPKRSRHPTKATAPHL 111 VSD VL+WLP +++W H + PH+ Sbjct: 67 VSDGRVLKWLPLERRW-----VEHSSAVIEPHM 94 >11_05_0075 + 18856659-18856878,18856890-18857107,18858253-18858319, 18858706-18859397 Length = 398 Score = 27.1 bits (57), Expect = 8.8 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Frame = -2 Query: 372 HTEDILDARQVHADERAHAGWWG-WLGGIWV----CGGCRGDCIRIVR*RAEER 226 H I D AGWWG W +W+ GG R VR RA R Sbjct: 152 HDLGISSTEDSQLDSEKLAGWWGAWRSPVWLGVKRAGGRAVAVSRWVRLRASRR 205 >10_06_0099 - 10677024-10677073,10677894-10677998,10678254-10678315, 10678694-10679197,10679695-10680356,10680695-10680793, 10680881-10681110,10681227-10681278,10681391-10681577, 10681661-10681873,10682006-10682175,10683455-10683730, 10684188-10684643,10685527-10685766,10687517-10687771 Length = 1186 Score = 27.1 bits (57), Expect = 8.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 348 RQVHADERAHAGWWGWLGGIWVCGGCRGDC 259 + HA A AG+ G L +W GGC C Sbjct: 19 KAAHAGAGAVAGFLGCLLLVWAMGGCGRGC 48 >07_01_1127 + 10456895-10457388,10457488-10458112 Length = 372 Score = 27.1 bits (57), Expect = 8.8 Identities = 23/78 (29%), Positives = 30/78 (38%) Frame = +3 Query: 87 NKSNCASPGKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNP 266 N SNC S +GTT +K + S+ DR T SS L C+ Sbjct: 266 NPSNCDSKKDSNGDSNYGTTDANVSKDFQPPIPTPSQNDRPQTDSSAKKTLICYNCKEPG 325 Query: 267 HGIRRRPRCPQASPTSPH 320 H R + Q+ P PH Sbjct: 326 HYSRDCLQPRQSRP--PH 341 >05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 Length = 378 Score = 27.1 bits (57), Expect = 8.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 182 LCSITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQP 307 L +++ RSR E RS + + SP PP Q PP++P Sbjct: 199 LHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQ-PPAKP 239 >03_06_0358 + 33366265-33366447,33367371-33367468,33367910-33368945, 33369042-33369554,33370456-33370644,33370715-33370848, 33371196-33371358 Length = 771 Score = 27.1 bits (57), Expect = 8.8 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Frame = +3 Query: 234 QLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDL--IHPAHLGCRH 407 QLA C+ + G+ R AH + + H + L+C + IHP+ H Sbjct: 218 QLAEAACQSSTRGVELRASASALKRLGDGPRAHSLLLSAHNQRLQCSMQTIHPS--STSH 275 Query: 408 RWRYT 422 YT Sbjct: 276 SGAYT 280 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,597,117 Number of Sequences: 37544 Number of extensions: 353805 Number of successful extensions: 1832 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1636 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1824 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1095026320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -