Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1300
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 79 2e-15
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 76 2e-14
11_06_0743 + 26847652-26849424 33 0.10
12_02_0106 + 13654686-13655789 29 2.2
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557... 29 2.9
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 28 3.8
08_02_1355 + 26343939-26345054 28 5.0
07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103 28 5.0
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 27 6.6
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 27 6.6
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 27 6.6
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 27 6.6
12_01_0253 + 1883731-1884011,1884810-1884852 27 8.8
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583... 27 8.8
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 27 8.8
07_01_1127 + 10456895-10457388,10457488-10458112 27 8.8
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 27 8.8
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 27 8.8
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ GT++GV++PC+QNI G+I +IR TW+VG AG Q ++V C T LT IS+SAIAT
Sbjct: 58 KFGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIAT 117
Query: 496 RGVV 507
G +
Sbjct: 118 NGAM 121
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 75.8 bits (178), Expect = 2e-14
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
++ T++GV++PC+QNI G+I +IR TW+VG G Q ++V C T LT IS+SAIAT
Sbjct: 64 KLDTMMGVFVPCLQNILGIIYYIRFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIAT 123
Query: 496 RGVV 507
G +
Sbjct: 124 NGAM 127
>11_06_0743 + 26847652-26849424
Length = 590
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 224 PRSSAR*RTMRIQSPRHP----PQTQMPPSQPHQPAWARSSACT 343
P SAR R R PRHP P T PP +P + ARS C+
Sbjct: 264 PGRSARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRRARSGRCS 307
>12_02_0106 + 13654686-13655789
Length = 367
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 221 QPRSSAR*RTMRIQSPRHPPQTQMPP-SQPHQPAWARS 331
+P +SA R R +P HPP +PP S P PA A +
Sbjct: 11 KPTASAH-RQYRYWAPPHPPAAALPPHSAPSPPASAEA 47
>05_03_0502 -
14754532-14754851,14754959-14755042,14755553-14755709,
14756198-14756638,14757590-14757808,14757873-14758193
Length = 513
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 70 KRSRHPTKATAPHLERKVTPTNMALP 147
K+ + + + P LER V PTN ALP
Sbjct: 6 KKRKREVEVSHPALERAVVPTNSALP 31
>09_02_0081 -
4041364-4041555,4041830-4041911,4042192-4042443,
4042529-4044001,4044222-4044733,4044824-4045021
Length = 902
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 263 SPRHPPQTQMPPSQPHQ 313
SPRHPP+ PP P Q
Sbjct: 504 SPRHPPRQPTPPPSPSQ 520
>08_02_1355 + 26343939-26345054
Length = 371
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 354 DARQVHADERAHAGWWGWLGGIWVCGGCRG 265
D H E H G+ GG+ VC GC G
Sbjct: 89 DGNDGHRLEDCHLGFLPERGGVVVCDGCNG 118
>07_03_0620 + 20013974-20014253,20014393-20014756,20014944-20015103
Length = 267
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 64 RPKRSRHPTKATAPHLERKVTPTNMALPTAQAIKAATLTFMLYH 195
R +R R P A +TP + AL A LTFM+ H
Sbjct: 157 RLRRRRRPAAADRWRRRSSITPCSNALVAGHDTSAILLTFMVRH 200
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 224 PRSSAR*RTMRIQSPRHPPQ----TQMPPSQPHQP 316
PRS+ R RT + SP PP+ T++P P P
Sbjct: 51 PRSAGRGRTWKRDSPEAPPRRSGITRVPNRSPEMP 85
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +3
Query: 96 NCASPGKKGDPDEHGTTHGTS-NKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNPHG 272
N +S G DE + TS N+G + + P S + + S PH
Sbjct: 126 NGSSRPSSGARDEKSSESQTSVNRGGHNQRSSFEQHRTSPAAVSKIAPVVSRTPTQAPHQ 185
Query: 273 IRRRPRCPQASPTSP 317
+ +P P+ SP P
Sbjct: 186 PKAQPSVPKVSPPQP 200
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 276 RRRPRCPQASPTSPHGHAHRRVPALHP 356
RR+P+ PQ P+ H H H P++ P
Sbjct: 4 RRKPQPPQTPPSLDH-HHHHHTPSVGP 29
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 61 QRPKRSRHPTKATAPHLERKVTPTNMALPTA 153
Q P R+ P +AT+P R TP P A
Sbjct: 298 QEPSRTGTPVRATSPDCSRPTTPRKTIGPNA 328
>12_01_0253 + 1883731-1884011,1884810-1884852
Length = 107
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 13 VSDKSVLQWLPKKKKWQRPKRSRHPTKATAPHL 111
VSD VL+WLP +++W H + PH+
Sbjct: 67 VSDGRVLKWLPLERRW-----VEHSSAVIEPHM 94
>11_05_0075 +
18856659-18856878,18856890-18857107,18858253-18858319,
18858706-18859397
Length = 398
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Frame = -2
Query: 372 HTEDILDARQVHADERAHAGWWG-WLGGIWV----CGGCRGDCIRIVR*RAEER 226
H I D AGWWG W +W+ GG R VR RA R
Sbjct: 152 HDLGISSTEDSQLDSEKLAGWWGAWRSPVWLGVKRAGGRAVAVSRWVRLRASRR 205
>10_06_0099 -
10677024-10677073,10677894-10677998,10678254-10678315,
10678694-10679197,10679695-10680356,10680695-10680793,
10680881-10681110,10681227-10681278,10681391-10681577,
10681661-10681873,10682006-10682175,10683455-10683730,
10684188-10684643,10685527-10685766,10687517-10687771
Length = 1186
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 348 RQVHADERAHAGWWGWLGGIWVCGGCRGDC 259
+ HA A AG+ G L +W GGC C
Sbjct: 19 KAAHAGAGAVAGFLGCLLLVWAMGGCGRGC 48
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/78 (29%), Positives = 30/78 (38%)
Frame = +3
Query: 87 NKSNCASPGKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRGPT*SSHVPQLASGLCEYNP 266
N SNC S +GTT +K + S+ DR T SS L C+
Sbjct: 266 NPSNCDSKKDSNGDSNYGTTDANVSKDFQPPIPTPSQNDRPQTDSSAKKTLICYNCKEPG 325
Query: 267 HGIRRRPRCPQASPTSPH 320
H R + Q+ P PH
Sbjct: 326 HYSRDCLQPRQSRP--PH 341
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 182 LCSITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQP 307
L +++ RSR E RS + + SP PP Q PP++P
Sbjct: 199 LHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQ-PPAKP 239
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 234 QLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDL--IHPAHLGCRH 407
QLA C+ + G+ R AH + + H + L+C + IHP+ H
Sbjct: 218 QLAEAACQSSTRGVELRASASALKRLGDGPRAHSLLLSAHNQRLQCSMQTIHPS--STSH 275
Query: 408 RWRYT 422
YT
Sbjct: 276 SGAYT 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,117
Number of Sequences: 37544
Number of extensions: 353805
Number of successful extensions: 1832
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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