Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1300
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 33 0.10
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 33 0.14
SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6) 31 0.55
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 31 0.73
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.73
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 29 2.9
SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9) 28 3.9
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 28 3.9
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 28 3.9
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 28 3.9
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 28 5.1
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 5.1
SB_17826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 27 6.8
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 27 6.8
SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8) 27 6.8
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.0
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 27 9.0
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017) 27 9.0
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 27 9.0
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.0
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ G + GV+ C+ NI+GV+L++RL+WVVG AG +I++ T +T +SMSAI T
Sbjct: 22 KFGWIKGVFFGCLLNIWGVMLYLRLSWVVGQAGIGLATVIIMLSAVVTTVTTLSMSAICT 81
Query: 496 RGVV 507
G V
Sbjct: 82 NGEV 85
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 187 LYHEEIEDRPRAATFLSSLADYANTI 264
LYHEE + PR ATFLS+++ Y ++
Sbjct: 579 LYHEEFSNSPRVATFLSTVSRYQASV 604
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Frame = +3
Query: 225 HVPQLASGLCEYNPHGIR----RRPRCPQASPTSPHGHAHRRVPALHPEYL---RCDLIH 383
H P LAS CE+ PH R RP +A P H R P H +L +C+ H
Sbjct: 101 HRPYLASDSCEHRPHLARDPYEHRPNLARA-PCEHRPHL-ARDPCKHRPHLAITQCE--H 156
Query: 384 PAHL---GCRHRWRYTRIP 431
HL C HR RIP
Sbjct: 157 RPHLPRTPCEHRLHLARIP 175
>SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6)
Length = 256
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +1
Query: 139 ALPTAQAIKAATLT----FMLYHEEIEDRPRAATFLSSLADY 252
A P A A + +T LY +EI+ RP+ + FLS+LA Y
Sbjct: 39 ASPNATATENLLITKDGNLALYEDEIQKRPKMSAFLSTLAKY 80
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 294 PQASPTSPHGHAHRRVPALH 353
P A+PT PH H H+R+ H
Sbjct: 441 PPATPTKPHNHVHKRLSRRH 460
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 306 PTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWRYTRIPHC 437
P+S H H HR + H RC L H L H R +R+ HC
Sbjct: 399 PSSRHHHCHRPLLFNHLRPSRCLLYHRPRLSNHH--RPSRLLHC 440
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 16 SDKSVLQWLPKKKKWQRPK-RSRHPTKATAPHLERKVTPTNMALPTAQAIKAAT 174
S+KSV QWL KKK R R HP K + T T P IK T
Sbjct: 223 SEKSVSQWLKSKKKEARQAWRKNHP-KINPFDMGEGGTSTQEPTPEYTVIKTFT 275
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 269 RHPPQTQMPPSQPHQP 316
R PP+ PPS PHQP
Sbjct: 252 RSPPRVSKPPSLPHQP 267
>SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)
Length = 253
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 52 KKWQRPKRSRHPTKATAPHLERKVTP---TNMALPTAQAIKAATLTFMLYHEEIEDRPRA 222
++W R + SR +A AP + TP +N A + I A L L I R A
Sbjct: 129 RRWPRGRASRRDARACAPMMPSAHTPVPESNSAWSASSVIGVAGLLVSLIGLYIRRRELA 188
Query: 223 ATF 231
A F
Sbjct: 189 AAF 191
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 200 RSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQP 316
R RT P + R R +Q P PP +PP P P
Sbjct: 403 RGRTIRPFPTPNRRRRRSLVQPPPPPPPAPLPPPPPPPP 441
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +3
Query: 285 PRCPQASPTSPHGH-AHRRVPALHPEYLRCDLIHPAHLGCRHRWRYTRIPHCSNLLLYDD 461
P AS + H H H P HP HP + IPH S +
Sbjct: 142 PHITHASTPTTHPHITHASTPTTHPHIAHASTTHPYITYASTPTTHPHIPHASTTTTHPY 201
Query: 462 VNR 470
+ R
Sbjct: 202 IAR 204
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 260 QSPRHPPQTQMPPSQPHQPAWARSSACT 343
Q+ +PP T PPSQP QPA SS T
Sbjct: 12 QTQANPPATT-PPSQPTQPATPASSEPT 38
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.9 bits (59), Expect = 5.1
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = +3
Query: 84 SNKSNCASP-GKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRG----PT*SSHVPQLASG 248
S + N SP G P+ + T +KG N S G P +S P+ S
Sbjct: 36 SPEGNSTSPEGNSTSPEGNSTRQLCYSKGNSGNTEGNSTSPEGNSASPEGNSTSPEGNSA 95
Query: 249 LCEYNPHGIRRRPRCPQASPTSPHGHA 329
E N CP+ + TSP G++
Sbjct: 96 SPEGNSTSPEGNSTCPEGNSTSPEGNS 122
>SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 396
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 188 SITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPH 310
+I + R P R + R Q PR PP T + S PH
Sbjct: 7 AIRRNKRYYHRPPAQKNRVKGGRRQEPRKPPHTDISKSNPH 47
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 108 PGKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRG 209
P + G PD HG HG L RDRG
Sbjct: 146 PDRHGPPDRHGMDHGRGRGRGRDRLSPPPHRDRG 179
>SB_17826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 215 LEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQPAWARSS 334
LE P A T P H P T + P PH A A+++
Sbjct: 4 LEDPLKPASTPTFAKNVPTHIPLTSVAPESPHPQASAKAT 43
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 81 PSNKSNCASPGKKGDPDEHGTTHGTSN 161
P+N ++ ASPGK G P+E + G+ N
Sbjct: 340 PTNAAS-ASPGKSGGPEERQSPMGSEN 365
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 67 PKRSRHPTKATAPHLERKVTPTNMALPTAQAI 162
P R PT AT P + TPT +PT + I
Sbjct: 182 PTSKRTPTPATEPVFTTQRTPTAKQVPTTERI 213
>SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8)
Length = 304
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 240 ASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIH-PAHLGCRHRWR 416
A G+ E P+G C + T H + RR L P C H + RWR
Sbjct: 171 ALGVVERVPYG-EPVTWCHRMVVTWKHDGSPRRTVDLSPLNKYCQHCHLTTFITPFGRWR 229
Query: 417 YTRIP 431
YTR+P
Sbjct: 230 YTRVP 234
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 102 ASPGKKGDPDEHGTTHGTSNKGCDTNLYALSRRDRG 209
A PG K + HGT +SNK Y +++ G
Sbjct: 368 AKPGNKNSSNAHGTKSSSSNKQTKKKKYTPNKQPPG 403
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 260 QSPRHPPQTQMPPSQPHQP 316
QSP P T PP +PH P
Sbjct: 422 QSPPQPSPTGAPPQRPHPP 440
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 46 KKKKWQRPKRSRHPTKATAPHLERKVTPTNMALPTA 153
K K +P +S PTK+T P K T + PT+
Sbjct: 187 KPTKPTKPTKSTKPTKSTKPTKSTKPTESKPTAPTS 222
>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
Length = 723
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 333 DERAHAGWWGWLGGIWVCGGCR 268
D H G WGW GG CG C+
Sbjct: 407 DAWGHPGGWGWGGG---CGCCK 425
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 168 SLYCLCRG*CHVRR-GHLSFQVRRSCFCWMAT 76
S+ CLCR CHV +LS V SC C + T
Sbjct: 45 SVSCLCRI-CHVVTVSNLSHDVTSSCLCHVVT 75
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 224 PRSSAR*RTMRIQSPRHPPQTQMPPSQPH 310
PR + R Q PR PP T S PH
Sbjct: 208 PRRKTGSKVGRRQEPRKPPHTDSSKSNPH 236
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 204 RGPT*SSHVPQLASGLCEYNPHGIRR-RPRCPQAS-PTSPHGHAHRRVPALHPEYLRCDL 377
+GP S +P GL +P R P P A P+ P H H+ + L P R
Sbjct: 3102 QGP--SHPIPHTHKGLRTLSPTRTRAFAPYPPHAQGPSHPISHTHKGLRTLSPTRTRAFA 3159
Query: 378 IHPAH 392
+P H
Sbjct: 3160 PYPPH 3164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,568
Number of Sequences: 59808
Number of extensions: 389628
Number of successful extensions: 1621
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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