Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1300
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical ... 102 1e-22
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 83 1e-16
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr... 79 2e-15
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p... 61 4e-10
Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical p... 61 4e-10
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ... 61 4e-10
AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical ... 61 4e-10
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 54 6e-08
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 47 7e-06
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 47 7e-06
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 31 0.49
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 30 0.85
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr... 29 2.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.6
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.6
AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine r... 29 2.6
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 28 4.5
U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical pr... 28 4.5
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 28 4.5
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 27 6.0
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 27 7.9
U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical pr... 27 7.9
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 27 7.9
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 27 7.9
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 27 7.9
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 27 7.9
>AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical
protein H16O14.1 protein.
Length = 977
Score = 102 bits (245), Expect = 1e-22
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +1
Query: 319 MGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
MGT++GV+LPC+QNIFGV+ FIRL W++GTAG Q F +VLTC T LT+IS+SAIAT
Sbjct: 1 MGTIMGVFLPCLQNIFGVLFFIRLAWIIGTAGVFQAFFVVLTCVSVTFLTSISLSAIATN 60
Query: 499 GVVP 510
GVVP
Sbjct: 61 GVVP 64
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +1
Query: 319 MGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
+G L+GVYLP IQ+I GV +FIRL W+VG AG Q FL++ CC T LT IS+SA+AT
Sbjct: 34 LGVLLGVYLPTIQHILGVTMFIRLFWLVGIAGLGQTFLLLFLCCFCTFLTCISISAVATN 93
Query: 499 GVV 507
GVV
Sbjct: 94 GVV 96
>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
protein K02A2.3 protein.
Length = 1020
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +1
Query: 319 MGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
+G ++GVYLP IQ+I GV +FIRL WVVG +G ++ CC +T+LT+IS+SA+AT
Sbjct: 70 LGVMLGVYLPTIQHILGVTMFIRLFWVVGMSGVAWTMALLAICCLSTLLTSISLSAVATN 129
Query: 499 GVV 507
GVV
Sbjct: 130 GVV 132
>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ G + GV++ C+ NIFGV+L++R++WV G AG G IVL T +TA+S AI T
Sbjct: 243 KFGWIQGVFVRCLLNIFGVMLYLRVSWVSGQAGVGLGSCIVLLASVVTTITALSTCAICT 302
Query: 496 RGVV 507
G V
Sbjct: 303 NGDV 306
>Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ G + GV++ C+ NIFGV+L++R++WV G AG G IVL T +TA+S AI T
Sbjct: 243 KFGWIQGVFVRCLLNIFGVMLYLRVSWVSGQAGVGLGSCIVLLASVVTTITALSTCAICT 302
Query: 496 RGVV 507
G V
Sbjct: 303 NGDV 306
>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ G + GV++ C+ NIFGV+L++R++WV G AG G IVL T +TA+S AI T
Sbjct: 243 KFGWIQGVFVRCLLNIFGVMLYLRVSWVSGQAGVGLGSCIVLLASVVTTITALSTCAICT 302
Query: 496 RGVV 507
G V
Sbjct: 303 NGDV 306
>AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 61.3 bits (142), Expect = 4e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+ G + GV++ C+ NIFGV+L++R++WV G AG G IVL T +TA+S AI T
Sbjct: 243 KFGWIQGVFVRCLLNIFGVMLYLRVSWVSGQAGVGLGSCIVLLASVVTTITALSTCAICT 302
Query: 496 RGVV 507
G V
Sbjct: 303 NGDV 306
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 54.0 bits (124), Expect = 6e-08
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 322 GTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
GT GV+ + NIFG+I+F+RL W+VGTAG L++ C ++T S I R
Sbjct: 48 GTWDGVFATVMVNIFGIIVFLRLGWIVGTAGVANSILLLGICTSLALITVFSAIGIVER 106
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 319 MGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
+ T+ GV+ P ++F ++LF+R+ +VVG G + L + MLT +S+ AI++
Sbjct: 70 LSTISGVFAPVALSMFSILLFLRMGFVVGQLGFLMTILQLAMAYAIVMLTVLSLCAISSN 129
Query: 499 GVV 507
G V
Sbjct: 130 GAV 132
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 319 MGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATR 498
+ T+ GV+ P ++F ++LF+R+ +VVG G + L + MLT +S+ AI++
Sbjct: 83 LSTISGVFAPVALSMFSILLFLRMGFVVGQLGFLMTILQLAMAYAIVMLTVLSLCAISSN 142
Query: 499 GVV 507
G V
Sbjct: 143 GAV 145
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 273 IRRRPRCPQASPTSPHGHAHRRVPALH----PEYLRCDLIHPAHLGC 401
+RR PR PQA PT H R VP + P R +++ A + C
Sbjct: 454 VRRPPRQPQALPTQDEIHVAREVPLANKSTTPSPTRSEMLRSAAIYC 500
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 273 IRRRPRCPQASPTSPHGHAHRRVPALH----PEYLRCDLIHPAHLGC 401
+RR PR PQA PT H R VP + P R +++ A + C
Sbjct: 454 VRRPPRQPQALPTQDEIHVAREVPLANKSTTPSPTRSEMLRSAAIYC 500
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 273 IRRRPRCPQASPTSPHGHAHRRVPALH----PEYLRCDLIHPAHLGC 401
+RR PR PQA PT H R VP + P R +++ A + C
Sbjct: 454 VRRPPRQPQALPTQDEIHVAREVPLANKSTTPSPTRSEMLRSAAIYC 500
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 358 NIFGVILFIRLTWVVGTAGAI 420
N+ +I+FI L+W++GTAG I
Sbjct: 63 NLTSLIIFILLSWILGTAGRI 83
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 1 GAPSVSDKSVLQWLPKKKKWQRPKRSRHPTKATAP 105
G P+ D + + P KK +PK S P K AP
Sbjct: 469 GGPNKKDPKLAKKAPTKKPADKPKPSEEPEKPVAP 503
>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
protein F56D5.9 protein.
Length = 1132
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 154 QAIKAATLTFMLYHEEIEDRPRAATFLSSLAD 249
+ IKA L F YH+E++ + TFL+ D
Sbjct: 679 EGIKALRLDFTYYHKELKAASESVTFLNKFLD 710
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 210 PT*SSHVPQLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEY 362
P+ S PQ + +Y+P P P +PTSP G + + P Y
Sbjct: 1735 PSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTY 1785
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 210 PT*SSHVPQLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEY 362
P+ S PQ + +Y+P P P +PTSP G + + P Y
Sbjct: 1742 PSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTY 1792
>AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine
receptor, class h protein82 protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 325 TLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCC 450
T GVY+ CI G I F+ L V+GT I + CC
Sbjct: 195 TASGVYVVCIDE--GYIKFLALFTVLGTLSEICQMAFFVLCC 234
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +1
Query: 46 KKKKWQRPKRSR------HPTKATAPHLERKVT-PTNMALPTAQAIKAATLTFMLYHEEI 204
+K +W+R R + + A LE+ VT PT+MA+ ++ K L F+ H E+
Sbjct: 152 RKDRWRRDSARRCSSGGQNQKRTFADILEKNVTAPTSMAITSSDNEKPPKLDFLAMHHEM 211
>U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical
protein C45G9.9 protein.
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 16 SDKSVLQWLPKKKKWQRPKRSRHPTKATAPHLERKVTPTNMALPTAQAIK 165
S K + KK+K +R K+S TK +AP K P M P+ A K
Sbjct: 41 SKKGLFGCCAKKRKTKRSKKSAKRTKRSAPKKAPKKAP--MKAPSKPAAK 88
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +1
Query: 46 KKKKWQRPKRSR------HPTKATAPHLERKVT-PTNMALPTAQAIKAATLTFMLYHEEI 204
+K +W+R R + + A LE+ VT PT+MA+ ++ K L F+ H E+
Sbjct: 152 RKDRWRRDSARRCSSGGQNQKRTFADILEKNVTAPTSMAITSSDNEKPPKLDFLAMHHEM 211
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 379 IRSHRRYSGCKAGTRR*ACPCGLVGL--AWGHLGLRRMPWG 263
+R H+++S C G + CP G G A G GL P G
Sbjct: 72 VRRHKKHSQCNCGPQASNCPAGPPGPPGAPGDRGLDGQPGG 112
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 361 IFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAI 489
I+G I++ W+ G ++ FL+ + C T A+S++ +
Sbjct: 398 IYGTIIY----WMAGLVASVTSFLVFVFVCITLTWVAVSIAYV 436
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 231 PQLASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLR 368
PQ++ Y P+ + P P P PHG+ P P Y+R
Sbjct: 189 PQMSGQRMPY-PYPPQGMPGYPGGPPPPPHGYEGYPPPGAQPGYMR 233
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 306 GWLGGIWVCGGCRGDCIRIVR*RAEERGCSRSVLDLFVIEHKG*CR 169
G+ G++ C GC+G R ++ + R C+R+ L + ++ C+
Sbjct: 122 GFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQ 167
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 224 PRSSAR*RTMRIQSPRHPPQTQMPPSQPH--QPAW 322
P ++AR Q P + PQ Q P QPH QPA+
Sbjct: 37 PCAAARAPYYPPQQPAYQPQYQQPAYQPHYQQPAY 71
>U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical
protein K03C7.3 protein.
Length = 191
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 345 ALHPEYLRCDLIHPAHLGCRHRWRYTRIPHCSNLLLYDDVNRNINVC 485
+LH ++ H A LG R+ + R HC L + ++ R +N C
Sbjct: 108 SLHSQHENVSKRHLAPLGIYFRFFFLR--HCFAFLFFTEMGRMMNCC 152
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 108 PGKKGDPDEHGTTHGTSNKG 167
PG++G+P + GT H N G
Sbjct: 198 PGQRGEPGQPGTVHTPGNPG 217
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 306 GWLGGIWVCGGCRGDCIRIVR*RAEERGCSRSVLDLFVIEHKG*CR 169
G+ G++ C GC+G R ++ + R C+R+ L + ++ C+
Sbjct: 122 GFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQ 167
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 306 GWLGGIWVCGGCRGDCIRIVR*RAEERGCSRSVLDLFVIEHKG*CR 169
G+ G++ C GC+G R ++ + R C+R+ L + ++ C+
Sbjct: 122 GFHYGVFACEGCKGFFRRSIQQKITYRACTRAEDCLILRNNRNRCQ 167
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 263 SPRHPPQTQMPPSQPHQPAW 322
SP HP +Q PP+ P P +
Sbjct: 540 SPHHPHPSQFPPNHPANPMY 559
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,271
Number of Sequences: 27780
Number of extensions: 272218
Number of successful extensions: 1320
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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