Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1300
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 84 6e-17
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 84 6e-17
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 84 6e-17
At1g04390.1 68414.m00429 expressed protein 31 0.60
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 30 1.0
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 29 1.4
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 1.4
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ... 29 1.8
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P... 28 3.2
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 28 3.2
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 28 3.2
At1g26140.1 68414.m03191 hypothetical protein 28 4.2
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 28 4.2
At1g04280.1 68414.m00419 expressed protein 28 4.2
At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative ... 27 5.5
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id... 27 5.5
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id... 27 5.5
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 27 5.5
At4g19930.1 68417.m02920 F-box family protein similar to F-box p... 27 7.3
At3g16590.1 68416.m02121 F-box family protein contains F-box dom... 27 7.3
At1g65000.1 68414.m07367 expressed protein 27 7.3
At5g27730.1 68418.m03326 expressed protein 27 9.7
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ... 27 9.7
At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protei... 27 9.7
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 83.8 bits (198), Expect = 6e-17
Identities = 35/64 (54%), Positives = 48/64 (75%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+MGT++GV++PC+QNI G+I +IR TW+VG AG QG ++V C T LT IS+SAIAT
Sbjct: 131 KMGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVFLCGLCTFLTTISLSAIAT 190
Query: 496 RGVV 507
G +
Sbjct: 191 NGAM 194
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 83.8 bits (198), Expect = 6e-17
Identities = 35/64 (54%), Positives = 48/64 (75%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+MGT++GV++PC+QNI G+I +IR TW+VG AG QG ++V C T LT IS+SAIAT
Sbjct: 131 KMGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVFLCGLCTFLTTISLSAIAT 190
Query: 496 RGVV 507
G +
Sbjct: 191 NGAM 194
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 83.8 bits (198), Expect = 6e-17
Identities = 35/64 (54%), Positives = 48/64 (75%)
Frame = +1
Query: 316 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 495
+MGT++GV++PC+QNI G+I +IR TW+VG AG QG ++V C T LT IS+SAIAT
Sbjct: 131 KMGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVFLCGLCTFLTTISLSAIAT 190
Query: 496 RGVV 507
G +
Sbjct: 191 NGAM 194
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 30.7 bits (66), Expect = 0.60
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 291 CPQASPTSPHGHAHRRVPALHPEYLR 368
C S TSPH H+HR + + EYLR
Sbjct: 671 CRMCSLTSPHAHSHRVILSSGCEYLR 696
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +1
Query: 67 PKRSRHPTKATAPHLERKVTPTNMALPTAQAIKAATLTFMLYHEEIEDRPRAATFLSS 240
P+ PT A PH R P N LP + T+ + RP A++ S
Sbjct: 345 PRSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRPPPASYTYS 402
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 197 KRSRTDLEQPRSSAR*RTMRIQSPRHPP-QTQMPPSQPHQP 316
KRSR + P+ + + PP Q + PP+QP QP
Sbjct: 128 KRSRKQKQPPKKPPNQPKQQPNQQKQPPDQQKQPPNQPRQP 168
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 264 PHGIRRRPRCPQASPTSPHGHAHRRVPALHP 356
PH R +P C + P PH RR P+ P
Sbjct: 6 PHFSRAKPPCRLSDPAQPHKLCRRRRPSYPP 36
>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 264 PHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHL 395
P+ R +P C + P PH RR P HP C HL
Sbjct: 12 PYLTRTKPPCRLSDPAQPHKLCRRRQPT-HPPLSICFTCKGKHL 54
>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1172
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 40 LPKKKKWQRPKRSRHPTKATAPHLERKVTPTNMALPT-AQAIKAATLTFMLYHEEIED 210
L KK+K R KRSR P + P + ++ +PT +QA + + + + E+ ED
Sbjct: 280 LEKKRKTVRFKRSRKPAFSFVPFVSSSKRKKSLEVPTQSQASENPSHSHTMSDEQNED 337
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 28.3 bits (60), Expect = 3.2
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +2
Query: 26 PFYNGFRKRKNGSGRNEVAIQQKQLRLTWKER*PRRTWHYPRHKQ*RLRH*PLCSITKRS 205
P Y G R N G + ++ L L + R TW + + +L H C I
Sbjct: 191 PIYKG-SSRTNIGGYHVTDYLKQLLSLKYPFHSSRFTWE--KAEDLKLEH---CYIAPDY 244
Query: 206 RTDL---EQPRSSAR*RTMRIQSPRHPPQTQMPPSQ 304
+++ ++ R A +T Q P PP T++PPS+
Sbjct: 245 ASEIRLFQEGRKEAEEKTSYWQLPWIPPPTEVPPSE 280
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = -2
Query: 447 AG*NNEESLYSASGADNPGEPDE*DHTEDILDARQVHADERAHAGWWGWLGGIWVCGGCR 268
AG ++ +S S D+ + D D ED+ + ++ + + G + CG
Sbjct: 58 AGDSDSDSDISDEEEDDDDDEDNDDDDEDVEEGKKASEENVVNGDGEKKADGNYKCGALE 117
Query: 267 GDCIRIV 247
GD IR++
Sbjct: 118 GDQIRVL 124
>At1g26140.1 68414.m03191 hypothetical protein
Length = 162
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 373 ILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISM 480
++F+ + + GA +VL+CCC ++ +S+
Sbjct: 37 VIFVHIRVMEEDCGAFAADCVVLSCCCQCLVLQVSV 72
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 258 YNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWR 416
Y+P RRR P SP+ + RR + P Y R D CR R R
Sbjct: 216 YSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRARDR 268
>At1g04280.1 68414.m00419 expressed protein
Length = 480
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 270 GIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHLGC 401
GIRR +A P ++H+R P+Y C+L+ A L C
Sbjct: 349 GIRRALMVKRAVRVKPQLNSHKRFANAFPKY--CELVDNARLYC 390
>At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H+-ATPase from [Lycopersicon esculentum] GI:1621440,
[Solanum tuberosum] GI:435001, SP|Q03194 {Nicotiana
plumbaginifolia}; contains InterPro accession IPR001757:
ATPase, E1-E2 type
Length = 948
Score = 27.5 bits (58), Expect = 5.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 309 WGWLGGIWV 283
WGW GGIWV
Sbjct: 820 WGWAGGIWV 828
>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 87 NKSNCASPGKKGDPDEHGTTHGTSNK 164
+KS+C P +G +EH + + SNK
Sbjct: 21 SKSHCKKPKDEGPTEEHNSRNAPSNK 46
>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 87 NKSNCASPGKKGDPDEHGTTHGTSNK 164
+KS+C P +G +EH + + SNK
Sbjct: 21 SKSHCKKPKDEGPTEEHNSRNAPSNK 46
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 264 PHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRC 371
P+ R +P C + P PH RR P+ HP C
Sbjct: 6 PYFSRAKPPCRLSDPAQPHMLCRRRRPS-HPPLSIC 40
>At4g19930.1 68417.m02920 F-box family protein similar to F-box
protein family, AtFBX8 (GI:20197464) {Arabidopsis
thaliana}; contains Pfam PF00646: F-box domain
Length = 431
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 425 PCIAPAVPTTQVSRMNKITPKIFWMQGRYTPMSV 324
PC +P +P TQ+ +N + W+Q ++ PM V
Sbjct: 243 PCPSPHLPITQILSINGRMHYLAWVQ-KFDPMLV 275
>At3g16590.1 68416.m02121 F-box family protein contains F-box domain
Pfam:PF00646
Length = 374
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 37 WLPKKKKWQRPKRSR 81
WL K+ KW PKRSR
Sbjct: 118 WLRKQTKWIEPKRSR 132
>At1g65000.1 68414.m07367 expressed protein
Length = 83
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 182 LCSITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQPAWA 325
LC K+S TDL SS R RH Q + +P P +A
Sbjct: 9 LCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYELKPDDPPYA 56
>At5g27730.1 68418.m03326 expressed protein
Length = 472
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 308 HQPAWARSSACT 343
H PAW RS ACT
Sbjct: 257 HHPAWRRSKACT 268
>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 476
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 394 WVVGTAGAIQGFLIVL 441
WVVG G I GF+I+L
Sbjct: 423 WVVGLVGGIDGFVILL 438
>At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protein
contains Pfam profile PF00641: Zn-finger in Ran binding
protein and others
Length = 137
Score = 26.6 bits (56), Expect = 9.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 303 WLGGIWVCGGCR 268
W GG W+CG C+
Sbjct: 3 WTGGDWLCGACQ 14
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,674,051
Number of Sequences: 28952
Number of extensions: 249835
Number of successful extensions: 1108
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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