Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1299
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   4.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   4.7  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   4.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 290 CNCPPVTSSPRC 325
           C CPP    PRC
Sbjct: 284 CKCPPGFVGPRC 295


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 137 TTDNTIASGTLLCSSLTQPLMA 72
           TTDN  A   +L S L +PL A
Sbjct: 124 TTDNVAAISGVLRSLLDRPLPA 145


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +2

Query: 269 RIPRYHCCNCPPVTSSPRCGPMIQQKRKLQQPAQPMT 379
           R  R H     PV S   C  +    +   QP  P+T
Sbjct: 64  RCERRHIKGAIPVVSLSTCSMLCGSTQLWPQPTGPVT 100


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 118 AMVLSVVGNKSDLES 162
           +MV S+ GN SDLE+
Sbjct: 52  SMVQSLDGNSSDLEN 66


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 290 CNCPPVTSSPRCGPMIQQKRK 352
           C+CP    + R GP     RK
Sbjct: 291 CDCPNCQEAERLGPAGVHLRK 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.124    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,493
Number of Sequences: 336
Number of extensions: 2028
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)