Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1299
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 85 5e-18
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 77 1e-15
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 68 5e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 61 6e-11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 61 8e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 58 4e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 48 6e-07
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 2e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 46 3e-06
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 39 3e-04
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.007
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.017
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 30 0.16
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 29 0.37
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 28 0.65
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 28 0.65
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 28 0.65
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 3.5
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p... 25 4.6
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 6.1
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 24 8.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 24 8.0
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 84.6 bits (200), Expect = 5e-18
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 1 APMYYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDL-ESLRAVP 177
APMYYRNAN A++V+DIT S K W+KELQ PE +V+++ GNK DL + RAV
Sbjct: 81 APMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVE 140
Query: 178 YNEATQYAATIGAAYCETSALHDQGIEKVF 267
+A YAA + ETSA + + ++F
Sbjct: 141 KADAEAYAAEANLLFFETSAKTAENVNELF 170
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 77.0 bits (181), Expect = 1e-15
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEA 189
YYR A AL+V+DIT SF + W+KEL+ + +V+ +VGNK+DL LRAV EA
Sbjct: 79 YYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEA 138
Query: 190 TQYAATIGAAYCETSALHDQGIEKVFK 270
+AA ++ ETSA+ +E+ F+
Sbjct: 139 QAFAAENNLSFIETSAMDASNVEEAFQ 165
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 68.1 bits (159), Expect = 5e-13
Identities = 29/86 (33%), Positives = 50/86 (58%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEA 189
YYR A+ ++V+D+T SF +K W++E+ E + +VGNKSD+ + V Y+ A
Sbjct: 77 YYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVA 136
Query: 190 TQYAATIGAAYCETSALHDQGIEKVF 267
++A ++ + ETSA +E+ F
Sbjct: 137 KEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 61.3 bits (142), Expect = 6e-11
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEA 189
YYR A A+LV+D+T+ SF + W+ ++++ P + + + G+KSDL++ R V EA
Sbjct: 82 YYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEA 141
Query: 190 TQYAAT--IGAAYCETSALHDQGIEKVF 267
++ + I +A+ ETS+ +E+ F
Sbjct: 142 AEFCSEKHISSAH-ETSSYTGSNVEECF 168
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 60.9 bits (141), Expect = 8e-11
Identities = 27/92 (29%), Positives = 54/92 (58%)
Frame = +1
Query: 4 PMYYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYN 183
P Y R+++ A++V+DIT+ SF + W++++++ + +++ +VGNK+DL R V
Sbjct: 78 PSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQE 137
Query: 184 EATQYAATIGAAYCETSALHDQGIEKVFKNTA 279
E + A + + ETSA ++ +F+ A
Sbjct: 138 EGEKKAKELKIMHMETSAKAGHNVKLLFRKIA 169
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 58.4 bits (135), Expect = 4e-10
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEA 189
YYR A LL++D+T +SF ++ W ++ + E + ++GNK D E R V + +
Sbjct: 78 YYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQG 137
Query: 190 TQYAATIGAAYCETSALHDQGIEKVF 267
A +G + E SA + +++ F
Sbjct: 138 QALADELGVKFLEASAKTNVNVDEAF 163
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 48.0 bits (109), Expect = 6e-07
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKE-LQSNVPEAMVLSVVGNKSDLESLRAVPYNE 186
Y R LLV++ITS SF I + ++ L+ + + +V NK DLE+ R V E
Sbjct: 76 YMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAE 135
Query: 187 ATQYAATIGAAYCETSALHDQGIEKVF 267
Q A ++ Y ETSA +E+ F
Sbjct: 136 GEQLAKSMHCLYVETSAKLRLNVEEAF 162
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.0 bits (104), Expect = 2e-06
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 34 LLVFDITSMQSFTAIK-GWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEATQYAATI 210
+LV+ ITS SF +K K L E + + VVGNKSDL RAV E A
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALANEW 141
Query: 211 GAAYCETSALHDQGIEKVFK 270
A+ E SA H++ + + F+
Sbjct: 142 KCAWTEASARHNENVARAFE 161
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 45.6 bits (103), Expect = 3e-06
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKE--LQSNV--PEAMVLSVVGNKSDL-ESLRAV 174
+YR A+ +LV+D+ + +SF + W E +Q++ PE ++GNK D+ E R V
Sbjct: 77 FYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMV 136
Query: 175 PYNEATQYAATIG-AAYCETSALHDQGIEKVFKNTA 279
++A + G Y ETSA +++ F+ A
Sbjct: 137 SKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 39.1 bits (87), Expect = 3e-04
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKEL--QSNVPE-AMVLSVVGNKSDLE-SLRAVP 177
+YR A+ ++V+++ + +SF +++ W +E Q++ E A +VGN+ D + S RAV
Sbjct: 77 FYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVS 136
Query: 178 YNEATQYAAT---IGAAYCETSALHDQGIEKVFKNTA 279
+ A Y + + E SA + + +F+ +
Sbjct: 137 LHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVS 173
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 34.3 bits (75), Expect = 0.007
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +1
Query: 4 PMYYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSD------LESL 165
PM +A A L +FD++ + +IK W ++ + A+ + ++G K D E
Sbjct: 77 PMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPI-LIGTKYDHFMTFPREDQ 135
Query: 166 RAVPYNEATQYAATIGAAYCETSALHDQGIEKVFK 270
+ +A +YA + A+ S H ++K+FK
Sbjct: 136 EEIT-KQARRYAKAMKASLVFCSTSHSINVQKIFK 169
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 33.1 bits (72), Expect = 0.017
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +1
Query: 10 YYRNANAALLVFDITSMQSFTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEA 189
YY +++FD+TS ++ + W ++L V E + + + GNK D++ + +A
Sbjct: 78 YYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDVKERKVKA--KA 134
Query: 190 TQYAATIGAAYCETSALHDQGIEKVF 267
+ Y + SA + EK F
Sbjct: 135 ITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.9 bits (64), Expect = 0.16
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 239 SADVSQ*AAPMVAAYCVASL*GTALRDSRSLLLPTTDNTIASGTLLCSSLTQ 84
+ADVSQ A ++ A C + G RDSRS LL + + + ++G LL + +
Sbjct: 223 AADVSQDALNVMRALCTSHPRGIHWRDSRSYLL-SQEISYSNGNLLVRGIVR 273
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 28.7 bits (61), Expect = 0.37
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 368 VLAVAIFSSVES*DRSEETRLLEDSCSSDIAVFLNTFS 255
V+ + F S+ + D T L C SD +VFL FS
Sbjct: 78 VIDIGCFHSILNSDHEPHTASLSHICHSDSSVFLRAFS 115
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 27.9 bits (59), Expect = 0.65
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 368 VLAVAIFSSVES*DRSEETRLLEDSCSSDIAVFLNTFS 255
V+ + F S+ + D T L C SD +VFL FS
Sbjct: 78 VIDIGCFHSILNSDHEPYTASLSHICHSDSSVFLRAFS 115
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 27.9 bits (59), Expect = 0.65
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 368 VLAVAIFSSVES*DRSEETRLLEDSCSSDIAVFLNTFS 255
V+ + F S+ + D T L C SD +VFL FS
Sbjct: 78 VIDIGCFHSILNSDHEPYTASLSHICHSDSSVFLRAFS 115
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 0.65
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 279 RGILEHFFDALIVQRGRFAVSGPDGGGILRRLIVGDRSQGFQIAFIADNGQH 124
R +L+H+ I + PD GG R + D + G A I N +H
Sbjct: 172 RPLLKHYISLNIPNYHNAVIVSPDAGGAKRATAIAD-ALGLDFALIHKNRRH 222
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 3.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 67 FTAIKGWVKELQSNVPEAMVLSVVGNKSDLESLRAVPYNEATQYAATI 210
F ++ W+ E Q P SV+GN+S + A P ATQ A +
Sbjct: 334 FHCLRNWL-ERQQTCPICR-RSVIGNQSSPTGIPASPNVRATQIATQV 379
>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 255 DALIVQRGRFAVSGPDGGGILRRLIVGDRSQGFQIAFIADN 133
D+ Q + A P+ +LR + G G+Q++F DN
Sbjct: 102 DSAKKQLEKIAERKPEENSVLRVTVDGGGCHGYQVSFRMDN 142
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 299 PPVTSSPRCGPMIQQKRK 352
PP+ SSP+C P Q +K
Sbjct: 177 PPIPSSPKCAPDPTQLQK 194
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 403 PLWRCGSRGHRLCWLLQFSLLLNHRT 326
PL+RC S GH L++ SL+ H+T
Sbjct: 8 PLFRCASSGH----LMKESLVFIHQT 29
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 1 APMYYRNANAALLVFDITSMQSFTA 75
A YYRN ++ I S+Q FTA
Sbjct: 941 AGWYYRNRGLWAVILAIMSLQRFTA 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.124 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,768
Number of Sequences: 5004
Number of extensions: 31899
Number of successful extensions: 84
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -