Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1299
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 172 PLSGIPDRFYCRQRTTPSP 116
           PL   P+R Y R+ T P P
Sbjct: 238 PLYQQPERHYERRATPPQP 256


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 341 QKRKLQQPAQPMTARP 388
           QKRK   P QP+ + P
Sbjct: 198 QKRKFNVPLQPVVSDP 213


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 341 QKRKLQQPAQPMTARP 388
           QKRK   P QP+ + P
Sbjct: 198 QKRKFNVPLQPVVSDP 213


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 215 PLTAKRPRCTIRASKKCS 268
           PL    PR T R  KKCS
Sbjct: 174 PLLGCFPRATNRDIKKCS 191


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 205 TIGAAYCETSALH 243
           TIG AYC    LH
Sbjct: 537 TIGDAYCVACGLH 549


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 338  QQKRKLQQPAQPMTARPTP 394
            QQ++  QQ  QP   +P P
Sbjct: 1513 QQQQPQQQSQQPQQQQPQP 1531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.124    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,737
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)