Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1297
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   3.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 105 RYITYVDIWSSG 70
           RY TY D+WS G
Sbjct: 670 RYTTYSDVWSFG 681


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 508  CLPGFLWALTGNICQIPD 455
            C PG  W    NIC  P+
Sbjct: 1307 CAPGLHWDNNKNICDWPE 1324


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 417 LIRTKRSTAAANTSGIWQIFPVKAQRKPGRHPPP 518
           +++ + ST+AA     WQ+ P+ +       P P
Sbjct: 51  ILQVRPSTSAAADVDGWQVTPLPSDGTTSPEPDP 84


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  EDQISTYVMYLLLWLNV 124
           +D  S Y ++LLLW+ V
Sbjct: 245 KDHNSLYSLHLLLWITV 261


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 401 GLRNKTHS 424
           GLRNKTHS
Sbjct: 139 GLRNKTHS 146


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 251 NSKI*LSRIFSLK*RKEYGSLLKLINVVF 337
           NS + +S+IF+L   K++  L KL+  V+
Sbjct: 8   NSLVLISKIFALLPVKKHHRLEKLVPCVY 36


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 79   PDINVCNVPATLA*CTQ 129
            PD NVC+ P  +  C Q
Sbjct: 955  PDQNVCDWPENVEGCMQ 971


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,547
Number of Sequences: 336
Number of extensions: 2548
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)