Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1297
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 491 KEAGQTSTANELANKNKLEQINFPLSFSVCVKIGPE 598
           K  G  +T NEL    +    N      V V +GPE
Sbjct: 45  KSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPE 80


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 210 HTYESFCLAFC 178
           HT  +FCL FC
Sbjct: 39  HTTNAFCLPFC 49


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 210 HTYESFCLAFC 178
           HT  +FCL FC
Sbjct: 38  HTTNAFCLPFC 48


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 502 PGFLWALTGNICQIPDVFAAAVDRFVRM 419
           P + WA   N   I  V+  A+D + R+
Sbjct: 109 PNWSWAKNQNCSGITSVYRIAIDEWDRL 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,845
Number of Sequences: 438
Number of extensions: 2927
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)