Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1297
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53660.1 68418.m06665 expressed protein                             29   2.4  
At1g18510.1 68414.m02310 hypothetical protein                          28   4.1  

>At5g53660.1 68418.m06665 expressed protein
          Length = 365

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 129 LSTLSQSSRYITYVDIWSSG 70
           L+T  Q ++Y+ ++D+WS G
Sbjct: 209 LATTEQENKYLNFIDVWSDG 228


>At1g18510.1 68414.m02310 hypothetical protein
          Length = 238

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 571 KR*WEIYLFQFVFIS*FIGGGCLPGFLWALTGNICQIP 458
           KR + IY++  +F+S  +GG  L  F++  T  I + P
Sbjct: 58  KRMFTIYIYAMIFVSIVLGGYSLKCFIYNTTFGIAKNP 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,176,558
Number of Sequences: 28952
Number of extensions: 195215
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)