Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1294
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.9  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   4.9  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   4.9  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.9  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   6.4  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 272 GCRHRWR 292
           GC HRWR
Sbjct: 378 GCEHRWR 384


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 GIWVCGGCRGDCIRIVR 120
           G++ C GC+G   R VR
Sbjct: 99  GVYSCEGCKGFFKRTVR 115


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LYLYHEEIEDRPRAATFLSSL 119
           +YL H  ++ RP  AT +S++
Sbjct: 216 VYLQHIFVKSRPSPATIISNV 236


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LYLYHEEIEDRPRAATFLSSL 119
           +YL H  ++ RP  AT +S++
Sbjct: 216 VYLQHIFVKSRPSPATIISNV 236


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LYLYHEEIEDRPRAATFLSSL 119
           +YL H  ++ RP  AT +S++
Sbjct: 536 VYLQHIFVKSRPSPATIISNV 556


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 464 RVEQHADRPAALRPQGP 414
           R+  H D+P   RP+ P
Sbjct: 25  RIRHHGDKPPQERPKVP 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,879
Number of Sequences: 336
Number of extensions: 3582
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)