Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1294
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...   104   9e-24
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    30   0.24 
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    27   1.7  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    27   3.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   6.8  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   9.0  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.0  
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    25   9.0  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score =  104 bits (250), Expect = 9e-24
 Identities = 41/110 (37%), Positives = 72/110 (65%)
 Frame = +3

Query: 192 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 371
           ++GT  G ++P   N+  ++L++R  W++G AG ++  L++       + T++S+SAI T
Sbjct: 76  KLGTFEGCFIPTTLNVLSILLYLRFPWIIGEAGVLKTLLMLFISYAVGIFTSLSISAICT 135

Query: 372 NGVVPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIVLT 521
           NG+V  GG+Y+ + RS+GPE GG++G++FY G  L   M I G VE +++
Sbjct: 136 NGMVRGGGAYYAVSRSIGPELGGSIGLIFYVGQILNTGMNISGFVEPIIS 185


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 58  FISITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQPAWARSS 210
           F S       + + P+S A   T+ +  P +   T  P   P +P ++RSS
Sbjct: 392 FTSTNTEDEQESDIPQSDANDSTVNLNQPNYANLTPTPQVSPKRPTYSRSS 442


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 134 YNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWR 292
           Y P+ + RRP+CP+   T       R +P+L+       L    HL   H W+
Sbjct: 129 YLPNQVIRRPKCPKPGSTL----YERFIPSLNETLSFVSLDIEQHLQYFHEWQ 177


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 338 VNRNINVCHRNE----RRGAGGGIVFHD 409
           V  N+ +C  N     RR +GGG VFHD
Sbjct: 74  VEANVKLCRDNFVNIIRRKSGGGTVFHD 101


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 293 YTRIPHCSNLLLYDDVNRNINVCHRNERR 379
           Y  + HCSN+ L  D N    V  R+  R
Sbjct: 367 YAELLHCSNMSLLSDPNGEAMVMQRDHLR 395


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 278 RHRWRYTRIPHCSNLLLYDDVNRNINVC 361
           R R      P CSNL+ ++ +N++++ C
Sbjct: 151 RKREDLVHCPACSNLVPHNQINQHLDSC 178


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 NPHGIRRRPRCPQASPTSPHGHAHRRVPA 223
           N H   R+   P  SP +P G+A++  PA
Sbjct: 158 NAHPAVRQTPQPAPSPNTPSGNANQLTPA 186


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 179 SPTSPHGHAHRRVPALHPEYLR 244
           S T PH  A   VP  HPEY R
Sbjct: 137 SSTKPH--AQNAVPTFHPEYGR 156


>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 212 ADERAHAGWWGWLGG 168
           A  + + GWWG LGG
Sbjct: 5   AGGKTYLGWWGHLGG 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,598
Number of Sequences: 5004
Number of extensions: 56528
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)