Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1294
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 134 7e-32
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 131 4e-31
11_06_0743 + 26847652-26849424 33 0.14
03_02_0718 + 10648025-10648669 31 1.00
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 30 1.7
12_02_0106 + 13654686-13655789 29 3.0
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 29 3.0
03_04_0031 - 16642947-16643864 29 3.0
11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793 29 4.0
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 29 4.0
11_06_0084 + 19899972-19900075,19900187-19900259,19900343-199004... 28 5.3
10_08_0974 + 21969713-21971914 28 5.3
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 28 5.3
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 28 5.3
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 28 5.3
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 28 5.3
08_02_1355 + 26343939-26345054 28 7.0
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 28 7.0
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 24 9.1
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 27 9.3
05_03_0594 - 15922956-15923483 27 9.3
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 27 9.3
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 27 9.3
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 27 9.3
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 134 bits (323), Expect = 7e-32
Identities = 56/109 (51%), Positives = 80/109 (73%)
Frame = +3
Query: 192 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 371
+ GT++GV++PC+QNI G+I +IR TW+VG AG Q ++V C T LT IS+SAIAT
Sbjct: 58 KFGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIAT 117
Query: 372 NGVVPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIVL 518
NG + GG Y++IGR+LGPE G ++G+ F+ G +A +MY++GAVE L
Sbjct: 118 NGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFL 166
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 131 bits (317), Expect = 4e-31
Identities = 55/109 (50%), Positives = 79/109 (72%)
Frame = +3
Query: 192 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 371
++ T++GV++PC+QNI G+I +IR TW+VG G Q ++V C T LT IS+SAIAT
Sbjct: 64 KLDTMMGVFVPCLQNILGIIYYIRFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIAT 123
Query: 372 NGVVPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIVL 518
NG + GG Y++IGR+LGPE G ++G+ F+ G +A AMY++GAVE L
Sbjct: 124 NGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL 172
>11_06_0743 + 26847652-26849424
Length = 590
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 100 PRSSAR*RTMRIQSPRHP----PQTQMPPSQPHQPAWARSSACT 219
P SAR R R PRHP P T PP +P + ARS C+
Sbjct: 264 PGRSARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRRARSGRCS 307
>03_02_0718 + 10648025-10648669
Length = 214
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 336 MLTAISMSAIATNGVVPAGGSYFMIGRSLGPECGGAVGMLFYTG 467
++ I+ + T G+ YF R PECGG VG Y G
Sbjct: 95 LIPCIAPAVPDTPGLYGDEDRYFFARRDTEPECGGGVGYYDYNG 138
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -2
Query: 439 PPHSGPRDRPIMKYDPP---AGTTP 374
PPH+G R+RP + DPP A TP
Sbjct: 244 PPHNGERERPRLVLDPPKRDASATP 268
>12_02_0106 + 13654686-13655789
Length = 367
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 97 QPRSSAR*RTMRIQSPRHPPQTQMPP-SQPHQPAWARS 207
+P +SA R R +P HPP +PP S P PA A +
Sbjct: 11 KPTASAH-RQYRYWAPPHPPAAALPPHSAPSPPASAEA 47
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +2
Query: 140 PHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWRYTRIPHCSN 319
PH RRRP P ASP + P ++P+ RC H C H R+P
Sbjct: 215 PHANRRRPAPPPASPILHRALSWPASP-IYPD--RCRRPHHPSTPCLH-VNLHRLPGLET 270
Query: 320 LLLYDDVNRNINVCHRNERRG 382
+ + N N+ ++RRG
Sbjct: 271 VAIIGKTN-GANLFAWDDRRG 290
>03_04_0031 - 16642947-16643864
Length = 305
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 494 RWSCRNRTDLHGTVDINFSAISLRTQKQCTTI 589
R CR + LHG VD +A S R Q+Q I
Sbjct: 53 RLECRGGSSLHGCVDEGAAAASRRRQEQAVEI 84
>11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793
Length = 389
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 357 SAIATNGVVPAGGSYFMI-GRSLGPECGGAVGMLFYTGTTLAAAMYIVG 500
+A A VVPAGG Y + R GP GAV + TG T+ A + G
Sbjct: 65 AAAAATVVVPAGGVYLVSRARFAGPCRSGAVAVNM-TGATVVAPVPYAG 112
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -2
Query: 502 APTMYIAAARVVPV*NSMPTAPPHSGPRDRPIMKYDPPAGT 380
AP AAA NSMP APP P + AGT
Sbjct: 8 APAAEAAAAATTATANSMPLAPPQPPSSGAPFSQPPSTAGT 48
>11_06_0084 +
19899972-19900075,19900187-19900259,19900343-19900443,
19901502-19901637
Length = 137
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 18 GLPTDKNKGCDTNLYLYHEEIEDRPRAATFLSSLADYANTI 140
GL T CD L + HE++ ++ L SLAD NT+
Sbjct: 98 GLSTGDRPTCDQCLKI-HEKLTEKAGLGCILRSLADTVNTV 137
>10_08_0974 + 21969713-21971914
Length = 733
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 396 IPPPAPRRSLRWQTLILRLTSSYSSRL 316
+PPP PRR+L L LR SS SS L
Sbjct: 1 MPPPPPRRALLAPLLRLRAFSSSSSSL 27
>09_02_0081 -
4041364-4041555,4041830-4041911,4042192-4042443,
4042529-4044001,4044222-4044733,4044824-4045021
Length = 902
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 139 SPRHPPQTQMPPSQPHQ 189
SPRHPP+ PP P Q
Sbjct: 504 SPRHPPRQPTPPPSPSQ 520
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = -2
Query: 457 NSMPTAPPHSGPRDRPIMKYDPP---AGTTPFVAMADIDIAVNIVVQQQVRTMRNPCIAP 287
+ + APP PR P + PP A P A + + + +V++ R P + P
Sbjct: 36 HGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYRITPPPQLPP 95
Query: 286 AVPTTQVSRMN 254
+ S N
Sbjct: 96 QLTEIPRSTFN 106
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 436 PHSGPRDRPIMKYDPPAGTTPFVAMADIDIAVN 338
PH+G R+RP + DPP A ++A N
Sbjct: 251 PHNGERERPRLNLDPPKRDPLATATPPAEVARN 283
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 28.3 bits (60), Expect = 5.3
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +3
Query: 264 LTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIATNGVVPAGGSYFMIGRSLGPECGGA 443
+T VG A A G +V+ T LTA++ + +A +PAG ++G + PE G A
Sbjct: 234 ITRKVGPALAC-GCTVVVKPSEFTPLTALAAADLALQAGIPAGAINVVMGNA--PEIGDA 290
Query: 444 ------VGMLFYTGTTLAAAMYIVGAVEIV 515
V + +TG+T + G+ V
Sbjct: 291 LLQSTQVRKITFTGSTAVGKKLMAGSANTV 320
>08_02_1355 + 26343939-26345054
Length = 371
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 230 DARQVHADERAHAGWWGWLGGIWVCGGCRG 141
D H E H G+ GG+ VC GC G
Sbjct: 89 DGNDGHRLEDCHLGFLPERGGVVVCDGCNG 118
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 25 PRTRIKAATLT-FI-SITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQP 183
P RIK L F+ +++ RSR E RS + + SP PP Q PP++P
Sbjct: 186 PGGRIKLEELQGFLHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQ-PPAKP 239
>11_01_0533 +
4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 24.2 bits (50), Expect(2) = 9.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 351 SMSAIATNGVVPAGGSYFMIGRSLGP--EC 434
S S+IA VV AGG +IG + P EC
Sbjct: 353 SKSSIAKKAVVDAGGIPVLIGAVVAPSKEC 382
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 432 CGGAVGMLFYTG 467
CGG V +L Y G
Sbjct: 403 CGGTVSLLLYLG 414
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 100 PRSSAR*RTMRIQSPRHPPQ----TQMPPSQPHQP 192
PRS+ R RT + SP PP+ T++P P P
Sbjct: 51 PRSAGRGRTWKRDSPEAPPRRSGITRVPNRSPEMP 85
>05_03_0594 - 15922956-15923483
Length = 175
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 308 HCSNLLLYDDVNRNINVCHRNERRGAGGGIVFHDRSVP 421
HC L V R VC +++R G GGG DRS+P
Sbjct: 133 HCRPQLDGGGVRRRAAVCWQSQR-GRGGGDDDDDRSLP 169
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 152 RRRPRCPQASPTSPHGHAHRRVPALHP 232
RR+P+ PQ P+ H H H P++ P
Sbjct: 4 RRKPQPPQTPPSLDH-HHHHHTPSVGP 29
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 321 CCCTTMLTAISMSAIATNGVVPAGG 395
CCC+ + TA S S++ +G GG
Sbjct: 10 CCCSCLATARSRSSVLNSGDAGGGG 34
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 333 TMLTAISMSAIATNGVVPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAV 506
T+ A + +A+ GG+ + G CGGA+G + +AA + AV
Sbjct: 8 TVRWATACAAVLNAAAASTGGAVAALALRGGGGCGGALGPAAAAASAASAARLVASAV 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,146
Number of Sequences: 37544
Number of extensions: 476202
Number of successful extensions: 2125
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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