Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1294
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 4e-26
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29) 58 4e-09
SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3) 52 3e-07
SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6) 36 0.036
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 33 0.14
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 33 0.19
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.77
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 31 1.0
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 31 1.0
SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.8
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35) 29 2.4
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 29 4.1
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 28 5.4
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 28 5.4
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 28 5.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 28 5.4
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 28 7.2
SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_17826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8) 27 9.5
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 115 bits (276), Expect = 4e-26
Identities = 51/108 (47%), Positives = 75/108 (69%)
Frame = +3
Query: 192 RMGTLIGVYLPCIQNIFGVILFIRLTWVVGTAGAIQGFLIVLTCCCTTMLTAISMSAIAT 371
+ G + GV+ C+ NI+GV+L++RL+WVVG AG +I++ T +T +SMSAI T
Sbjct: 22 KFGWIKGVFFGCLLNIWGVMLYLRLSWVVGQAGIGLATVIIMLSAVVTTVTTLSMSAICT 81
Query: 372 NGVVPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIV 515
NG V GG+Y++I RSLGPE GG++G++F + +A AMY+VG E V
Sbjct: 82 NGEVKGGGAYYLISRSLGPEFGGSIGIIFSIASAVAVAMYVVGFAETV 129
>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
Length = 420
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +3
Query: 381 VPAGGSYFMIGRSLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIV 515
VP GG+Y++I RSLGPE GG++G++F +A A+Y+VG E V
Sbjct: 202 VPTGGAYYLISRSLGPEFGGSIGLIFSLANAVAVALYVVGFAETV 246
>SB_57568| Best HMM Match : PqiA (HMM E-Value=0.3)
Length = 266
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 288 GAIQGFLIVLTCCCTTMLTAISMSAIATNGVVPAGGSYFMIGRSLGPECGGAVGMLFYTG 467
G ++G CC + S ++ + +MI R+LGPE GGA+G++F+
Sbjct: 7 GKVEGLCYCKKCCVDDWIHVESHLTCLV--LISSPMFLYMISRTLGPEFGGAIGIIFFFA 64
Query: 468 TTLAAAMYIVGAVEIVLTYMAPWISI--FRRFH*G 566
A+A+Y++G VE +L P S+ FH G
Sbjct: 65 NVFASALYVLGFVEALLNNFGPRGSLAHIESFHQG 99
>SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6)
Length = 256
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 48 DTNLYLYHEEIEDRPRAATFLSSLADY 128
D NL LY +EI+ RP+ + FLS+LA Y
Sbjct: 54 DGNLALYEDEIQKRPKMSAFLSTLAKY 80
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 63 LYHEEIEDRPRAATFLSSLADYANTI 140
LYHEE + PR ATFLS+++ Y ++
Sbjct: 579 LYHEEFSNSPRVATFLSTVSRYQASV 604
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 33.1 bits (72), Expect = 0.19
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Frame = +2
Query: 101 HVPQLASGLCEYNPHGIR----RRPRCPQASPTSPHGHAHRRVPALHPEYL---RCDLIH 259
H P LAS CE+ PH R RP +A P H R P H +L +C+ H
Sbjct: 101 HRPYLASDSCEHRPHLARDPYEHRPNLARA-PCEHRPHL-ARDPCKHRPHLAITQCE--H 156
Query: 260 PAHL---GCRHRWRYTRIP 307
HL C HR RIP
Sbjct: 157 RPHLPRTPCEHRLHLARIP 175
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 182 PTSPHGHAHRRVPALHPEYLRCDLIHPAHLGCRHRWRYTRIPHCSNLLLYDDVNRNINVC 361
P+S H H HR + H RC L H L H R +R+ HC L + + + ++
Sbjct: 399 PSSRHHHCHRPLLFNHLRPSRCLLYHRPRLSNHH--RPSRLLHCHRPRLSNHLRLSRHL- 455
Query: 362 HRNERR 379
H + RR
Sbjct: 456 HYHRRR 461
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 448 PTAPPHSGPRDRPIMKYDPPAGTTPFVAMADIDIAVNIVVQQQVRTMRNP-CIAPAVPTT 272
P +P H P +PI + PPA TT +A A + T+ +P AP+VP+
Sbjct: 15 PPSPKHYTPT-QPINQVPPPALTTAIPTVAAYQAAHPSAINASPTTVGSPSTTAPSVPSP 73
Query: 271 Q 269
Q
Sbjct: 74 Q 74
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 170 PQASPTSPHGHAHRRVPALH 229
P A+PT PH H H+R+ H
Sbjct: 441 PPATPTKPHNHVHKRLSRRH 460
>SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 315 LTCCCTTMLTAISMSAIATN---GVVPAG---GSYFMIGRSLGPECGGAVGMLFYTGTTL 476
L+ CT ++ + +S +AT G G G Y+ +GR LG GG + + +
Sbjct: 445 LSGICTALVWSSLVSYVATPPRIGATLQGILHGLYYGLGRGLGQIAGGMLIQDYGSSKFF 504
Query: 477 AAAMYIVGAVEIVLTYMAPWI 539
+ IV A+ ++ ++AP I
Sbjct: 505 SRFALIVMAITVIFLFIAPII 525
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 98 SH-VPQLASGLCEYNPHGIRR-RPRCPQAS-PTSPHGHAHRRVPALHPEYLRCDLIHPAH 268
SH +P GLC +P R P P A P+ P H H+ + L P R +P H
Sbjct: 3073 SHPMPHTHIGLCTLSPRRTRAFAPYPPHAQGPSHPIPHTHKGLRTLSPTRTRAFAPYPPH 3132
>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 240 FGVILFIRLTWVVGTAGAIQGFL-IVLTCCCTTMLTAISMSAIATNGVVPAGGSYFMIGR 416
F I +I+ W+V +QG + CT+ + I+ +T+ G + +GR
Sbjct: 382 FLYISWIQNPWLVLPLEVLQGLTHAAVWASCTSYMGRIAPPGYSTSAQGILQGVHHGLGR 441
Query: 417 SLGPECGGAVGMLFYTGTTLAAAMYIVGAVEIVLTY 524
G GG M+ + GT ++Y + + +++ +
Sbjct: 442 GCGAIVGGV--MIHHFGTNKTFSLYGIACLVVLVIF 475
>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
Length = 806
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 499 PTMYIAAARVVPV*NSMPTAPPHSGPRDRPIMKYDPPAGTTPFV 368
P + A ++ + + +P A PH D + YD P GTT V
Sbjct: 488 PYIEATIAEILRIRSIVPLALPHKATCDTTLSGYDVPKGTTVIV 531
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 145 RHPPQTQMPPSQPHQP 192
R PP+ PPS PHQP
Sbjct: 252 RSPPRVSKPPSLPHQP 267
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 76 RSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQP 192
R RT P + R R +Q P PP +PP P P
Sbjct: 403 RGRTIRPFPTPNRRRRRSLVQPPPPPPPAPLPPPPPPPP 441
>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 502 APTMYIAAARVVPV*NSMPTAPPHSGPRDRP-IMKYDPPAGTTP 374
+P IAAARV SM P S RDRP YD G P
Sbjct: 507 SPRDLIAAARVRKSQESMGDVTPRSSSRDRPNRSSYDSVDGPRP 550
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 PRCPQASPTSPHGH-AHRRVPALHPEYLRCDLIHPAHLGCRHRWRYTRIPHCSNLLLYDD 337
P AS + H H H P HP HP + IPH S +
Sbjct: 142 PHITHASTPTTHPHITHASTPTTHPHIAHASTTHPYITYASTPTTHPHIPHASTTTTHPY 201
Query: 338 VNR 346
+ R
Sbjct: 202 IAR 204
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 136 QSPRHPPQTQMPPSQPHQPAWARSSACT 219
Q+ +PP T PPSQP QPA SS T
Sbjct: 12 QTQANPPATT-PPSQPTQPATPASSEPT 38
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 266 HLGCRHRWRYTRIPHCSNLLLYDDVNRNINVCHRNERRGAGGGIVFHD 409
H C+ + P SN+L N++ + C+R+ +GGG VF+D
Sbjct: 1324 HNACKKAYENETWPVTSNMLCAGYKNKSRDSCNRD----SGGGFVFYD 1367
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 360 AIATNGVVPAGGSYFMIGRSLGPECGGAVGMLFYT--GTTLAAAMYIVGAV 506
AIA+ + GG + +GR++ P A+ + T GT AAA AV
Sbjct: 256 AIASMNLFDLGGQFLRVGRAITPPTSSAMAAINTTPPGTLPAAAAIAAAAV 306
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 448 PTAPPHSGPRDRPIMKYDPPAGTTPFVAMADIDIAVNIVVQQQVRTMRNP 299
P PPHS P P+++ +PP P D I +QV +++P
Sbjct: 365 PPPPPHSPPPPLPVIQLNPPP-ARPLERTLDDCYRTLIRALEQVLPLQSP 413
>SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 396
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 64 SITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPH 186
+I + R P R + R Q PR PP T + S PH
Sbjct: 7 AIRRNKRYYHRPPAQKNRVKGGRRQEPRKPPHTDISKSNPH 47
>SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 7 PENMDYPRTRIKAATLTFISITKRSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPH 186
P P TR + +T + T+ QP + + T + R+ P T+ P+ +
Sbjct: 19 PNTRYQPNTRYQPST-RYQPNTRYQPNTRYQPNTQYQPNTRYQPNTRYHPNTRYQPNTRY 77
Query: 187 QPAWARSSACTC 222
QP RS +C
Sbjct: 78 QPKTGRSLRISC 89
>SB_32053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 484 AAARVVPV*NSMPTAPPHSGPRDRPIMKYDPPAGTTP 374
AAA PV +P +PP +G P + P + T+P
Sbjct: 299 AAASPKPVAKPIPASPPSTGKPSPPPLGESPASNTSP 335
>SB_17826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 91 LEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQPAWARSS 210
LE P A T P H P T + P PH A A+++
Sbjct: 4 LEDPLKPASTPTFAKNVPTHIPLTSVAPESPHPQASAKAT 43
>SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8)
Length = 304
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 116 ASGLCEYNPHGIRRRPRCPQASPTSPHGHAHRRVPALHPEYLRCDLIH-PAHLGCRHRWR 292
A G+ E P+G C + T H + RR L P C H + RWR
Sbjct: 171 ALGVVERVPYG-EPVTWCHRMVVTWKHDGSPRRTVDLSPLNKYCQHCHLTTFITPFGRWR 229
Query: 293 YTRIP 307
YTR+P
Sbjct: 230 YTRVP 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,781
Number of Sequences: 59808
Number of extensions: 495577
Number of successful extensions: 1840
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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