Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1294
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.61 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.61 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.80 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.80 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 334 VVQQQVRTMRNPCIAPAVPTTQVSRMNKITPKIF 233
           V+ + VR     C  P  P+TQ      +TPK F
Sbjct: 376 VLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRF 409


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 334 VVQQQVRTMRNPCIAPAVPTTQVSRMNKITPKIF 233
           V+ + VR     C  P  P+TQ      +TPK F
Sbjct: 376 VLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRF 409


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 420 LGPECGGAVG---MLFYTGTTLAAAMYIVGAVEIVLTY 524
           L P+  G +G   +L+YT TT+ AA  IVG V +++ +
Sbjct: 126 LDPKGSGRMGYRALLYYTVTTILAA--IVGIVMVLIIH 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 15   HGLPTDKNKGCDTNLYLYH 71
            + +PTDK   CD+ L + H
Sbjct: 1477 YAVPTDKKSACDSKLIVDH 1495


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 182 GWLGGIWVCGGCRGDCIRIVR*RAEERGCSRS 87
           G+  G+  C GC+G   R ++ + + R C+++
Sbjct: 76  GFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKN 107


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 GIWVCGGCRGDCIRIVR 120
           G++ C GC+G   R VR
Sbjct: 123 GVYSCEGCKGFFKRTVR 139


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 331 RRC*PQYQCLPSQRTA 378
           RR  P ++C PSQR A
Sbjct: 415 RRYQPAFRCKPSQRFA 430


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 GIWVCGGCRGDCIRIVR 120
           G++ C GC+G   R VR
Sbjct: 123 GVYSCEGCKGFFKRTVR 139


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 236 ILDARQVHADERAHAGWWGWL 174
           + D   + AD   +AG W WL
Sbjct: 397 VFDELLLDADWSVNAGMWMWL 417


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 396 IPPPAPRRSLRWQTLILRLTS 334
           +PPP P R   W    LR T+
Sbjct: 375 LPPPPPIRGGEWTFDTLRKTT 395


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 188 WWGWL 174
           WWGWL
Sbjct: 232 WWGWL 236


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 581 YIASGSLVKSPKN*YPRCHVSQYDFDSSNDVH 486
           Y   G ++  P     + +++ YD  S ND++
Sbjct: 131 YKIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 314 SNLLLYDDVNRNINVCHRNERRG 382
           SN+ +YD  + N   C + E+ G
Sbjct: 148 SNITMYDLKSHNDIYCEKYEKNG 170


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 151 PPQTQMPPSQPH 186
           PP  ++PP  PH
Sbjct: 96  PPTRKLPPLHPH 107


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 76  RSRTDLEQPRSSAR*RTMRIQSPRHPPQTQMPPSQPHQ 189
           RSR+     R S+     R  S    P   +  SQPHQ
Sbjct: 18  RSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQ 55


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 351 SMSAIATNGVVPAGGSYFMIGRSLGP 428
           +++   T G +P   S+   GR++GP
Sbjct: 629 TLTCSVTRGDLPLSISWLKDGRAMGP 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,572
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)