Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1293
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   0.91 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.5  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 356
           + F  F   + A D C+  N T++L   LK++I ++
Sbjct: 202 YVFDLFYLSKRASDLCNEANKTKILLVGLKIDIDQE 237


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 274 KFSNSMKA-KPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 128
           KF  S ++ KP G  +T T    P LSN    +     ++   + T +PP
Sbjct: 114 KFETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPP 163


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 244 GGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTY 143
           GG SA++ + +  +LS+       L PS  PP++
Sbjct: 93  GGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 412 VVVHSEVREEAGLTTHT 462
           VVV  EV EE  L  HT
Sbjct: 864 VVVKKEVDEEERLENHT 880


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,636
Number of Sequences: 336
Number of extensions: 1920
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)