Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1293
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 45 8e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 9e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 41 9e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 1e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 40 2e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 39 4e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 4e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 7e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.005
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.005
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.006
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.008
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.011
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.014
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.019
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.033
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.044
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.058
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.077
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.077
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.10
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.10
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.18
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.18
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.18
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.23
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.23
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.31
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.31
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 29 0.54
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.54
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.71
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 0.71
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 2.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.8
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.8
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 44.8 bits (101), Expect = 8e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 290
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 291 ACSAMNGTEMLGATLKVE 344
A +++NG+ G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 9e-05
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKK-EDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
R+ + L IKK + LE F K+GK+ + + G FAF+ ++ + AE+A ++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 303 MNGTEMLGATLKVE 344
+NGTE+ G + V+
Sbjct: 168 LNGTEIDGRPIAVD 181
Score = 34.7 bits (76), Expect = 0.008
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 284
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 285 EDACSAMNGTEMLGATLKVEIS 350
+ A + ++ G L+++ +
Sbjct: 60 QRAAKELKNKKLHGRILRLDFA 81
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.1 bits (92), Expect = 9e-05
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 315 EMLGATLKVEISR 353
E +G+ + VE +R
Sbjct: 61 EFMGSRIVVEPAR 73
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
G R+ V L E + +DL+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Query: 312 TEMLG 326
+ G
Sbjct: 157 EVIKG 161
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 299
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 300 AMNGTEMLGATLKVE 344
A+ T +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 34.3 bits (75), Expect = 0.011
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 302
R+++ L ++DL+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 303 MNGTEMLGATLKV 341
++ G L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 32.3 bits (70), Expect = 0.044
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKY-GKLNSVWVALNPP---------GFAFIEFENLQEAED 290
+YV L K+E+ ++ F G L++V A P GF F+EF++ A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 291 ACSAMNGTEMLGATLKVEISRK 356
A AMNG + G L++++S +
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQ 702
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 296
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 297 SAMNGTEMLGATLKVEISR 353
S ++ G+ L++E +R
Sbjct: 66 SYLSNATFKGSKLRIEEAR 84
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.1 bits (87), Expect = 4e-04
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 308
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 309 G--TEMLGATLKVEISRK 356
G E G L+VE +++
Sbjct: 69 GRRLERGGGVLRVEWAKQ 86
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 306 NGTEMLGATLKVEISR 353
G + G + V++ R
Sbjct: 162 AGLMLNGRRIVVDVER 177
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 296
+M T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKAI 349
Query: 297 SAMNG 311
+ M G
Sbjct: 350 NTMQG 354
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 174 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
++D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
Score = 33.1 bits (72), Expect = 0.025
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 305
R+ V + + ED++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 306 NGTEMLGATLKV 341
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 284
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 290
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 291 ACSAMNGTEMLGATLKVEISR 353
A +NG + + V+ +R
Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
Score = 29.1 bits (62), Expect = 0.41
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNS-VWVALNPP----------------GFAFIEFE 269
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 270 NLQEAEDACSAMNGTEMLGATLKVE 344
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.1 bits (77), Expect = 0.006
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 141 VYVGGLVEGIK----KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 302
+Y+ + E I+ K LE F YGK+ V L G AF+ F+NL+ A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 303 MNGTEMLGATLKVEISR 353
+ G + G + ++ S+
Sbjct: 88 LQGYPLYGKPMMIQYSK 104
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.008
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
VYVG + + E+L+ F G +N V + + P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 306 NGTEMLGATLKVEISR 353
NG+ + LKV R
Sbjct: 116 NGSMLHERPLKVTPKR 131
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.011
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 284
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 285 EDACSAMNGTEMLGATLKVEIS 350
+ C MNG + G +++ S
Sbjct: 421 K-KCVEMNGHFIAGRPCRLDFS 441
Score = 33.5 bits (73), Expect = 0.019
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
V+VG L + + L +EF++YG + V ++ G+ +++FE EA A A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAA 323
Query: 306 NGT-EMLGATLKVEIS 350
NGT E+ G + +++S
Sbjct: 324 NGTKEIDGRMVNLDLS 339
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.9 bits (74), Expect = 0.014
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGT 314
+++ L I E++ F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 315 EMLGATLKV 341
+ L V
Sbjct: 74 NFMDRYLVV 82
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.5 bits (73), Expect = 0.019
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSA 302
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A SA
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 303 MNGTEMLGATLKVEISR 353
G ++ L V +S+
Sbjct: 816 A-GKQLGNRVLNVVLSK 831
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 32.7 bits (71), Expect = 0.033
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
+YV L G + F YG + +W+ L+P A + +E+L A A A++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALH 56
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.3 bits (70), Expect = 0.044
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 321 LGATLKVEIS 350
+ V IS
Sbjct: 648 FFGSDPVCIS 657
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.058
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
+ +E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.077
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 174 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.077
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 303 MNGTEMLGATLKVEIS 350
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+YVG L G ++ + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 306 NGTEMLGATLKVEI 347
+ + G L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 306 NGTEMLGATLKVEISRK 356
N T + G ++ S++
Sbjct: 142 NYTLIKGRPCRIMWSQR 158
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
EDLE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 342 EISR 353
+ S+
Sbjct: 318 DFSQ 321
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 290
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 291 ACSAMNGTEMLGATLKVE 344
A +N +E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.23
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 229 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 125
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.9 bits (64), Expect = 0.23
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 306 NGTEM 320
+ T +
Sbjct: 94 SRTSL 98
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 308
+YVG L +L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 309 GTEMLGATLKV 341
G G L++
Sbjct: 342 GYRYGGRPLQL 352
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.5 bits (63), Expect = 0.31
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 308
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 309 GTEMLGATLKV 341
+ + ++V
Sbjct: 68 YSILCDRCIRV 78
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 0.54
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = -1
Query: 339 LSKWRLTSQYHSSRYTHLPPPASSQIL*KRNLGDLVLPKLSLVFHIYRTRVRDLPS*FPX 160
L KWRLTS++ +S + R + L L +L ++T +R+L +
Sbjct: 684 LKKWRLTSRFCLGNLHDWNTSSSVDVGELRGIDKLALVQLDK----FQTEIRELYESYSI 739
Query: 159 XXXXXXREYHPNSWFSIIYEDTTK 88
Y NS+ S Y D K
Sbjct: 740 NKVVHHLNYFMNSFLSSTYFDAVK 763
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.54
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
+++VGG+ +E+ F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.71
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 227
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 0.71
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 346 ISTFKVAPNISVPFIALHASSASCK---FSNSMKAKPGGFSATQTEFSFPYLSNSRSRSS 176
IS+ + S P A +SS+S +S+ S+ + +S P SNS + S+
Sbjct: 763 ISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSST 822
Query: 175 FLIPSTRPPTYTRVP 131
+I S +YT +P
Sbjct: 823 SIISSIASSSYTSIP 837
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-FAFIEFENLQEAEDACSAMNGTE 317
+YVG L +E+L+ F + G F+EFEN+ A +A + G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 318 MLGATLK 338
L +++K
Sbjct: 487 CLSSSIK 493
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 325 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 158
P S F +L +S++S + S S + SA T S YLS+S SS PS+
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 174 KEDLEREFDKYGKLNSVWVAL 236
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G + V G+ +E +E F +G + ++ + L+ G+A IE+ L++A+ A
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 297 SAMNGTEMLGATLKVEIS 350
N +L L+V+ +
Sbjct: 69 DEKN-LSLLDEKLEVDFA 85
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 294 THLPPPASSQIL*KRNLGDLVLPKLSLVF 208
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 195 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
F KYGK+ + P FAF+ F++ Q A A + L+VE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,530
Number of Sequences: 5004
Number of extensions: 31591
Number of successful extensions: 146
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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