Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1293
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 81 5e-16
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 1e-14
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 56 1e-08
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 56 2e-08
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 49 3e-06
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 46 2e-05
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 45 4e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 6e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 44 7e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 41 5e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 5e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 39 0.002
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 38 0.006
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 38 0.006
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 37 0.011
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 36 0.015
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.034
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 35 0.034
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 34 0.060
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.32
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.42
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 1.3
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.3
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 1.3
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.7
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 2.2
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 3.0
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 3.0
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 3.0
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 3.9
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 3.9
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 3.9
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 6.9
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 27 9.1
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 81.0 bits (191), Expect = 5e-16
Identities = 33/72 (45%), Positives = 51/72 (70%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T++YVG L +LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A ++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 315 EMLGATLKVEIS 350
+ T++VE S
Sbjct: 64 NVCDRTIRVEFS 75
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 77.8 bits (183), Expect = 5e-15
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
+RVY+G + + K ++EREF+ +G L VWVA NPPGFAF FE+ ++AEDA ++G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 315 EMLGATLKVEISR 353
+ G +VE+++
Sbjct: 62 YICGQRARVELAK 74
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T+VY+G L + K ++E EF YG L VWVA NPPGFAF F++ ++AEDA ++G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 315 EMLGATLKVEISR 353
+ G ++VE+++
Sbjct: 92 YICGQRVRVELAK 104
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
RVY+G L G ++D+ R F YG+L + + N + F+EFE+ ++A+DA NG E
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNGKE 60
Query: 318 MLGATLKVEISR 353
MLG + VE SR
Sbjct: 61 MLGERILVEHSR 72
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAED 290
+S RVYVG L + ++++DL F KYG + V + PP FAF+EFE+ ++AED
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFEDPRDAED 315
Query: 291 ACSAMNGTEMLGATLKVEISR 353
A +G E G ++VE R
Sbjct: 316 AVKGRDGHEFDGYRIRVEFPR 336
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G ++V + E +++D+ F YG++ ++ V L+ G+A +E+E +EA+ A
Sbjct: 292 GWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSAL 351
Query: 297 SAMNGTEMLGATLKVE 344
A+NG EMLG + V+
Sbjct: 352 EALNGAEMLGQNISVD 367
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
RVY+G L G +++D+++ F YG+ + L G+ F+EF+ +AEDA NG +
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKK 62
Query: 318 MLG 326
MLG
Sbjct: 63 MLG 65
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
VYVG L + DL + F++YGK+ V + + G AFI F + Q A++A +A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 306 NGTEMLGATLKVEISR 353
N +M G T+K I++
Sbjct: 72 NKKQMFGRTIKCTIAK 87
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 305
S TRVY G L ++ DLE+ YG++ + + L G+ F+EF++ ++A+D +
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDL 58
Query: 306 NGTEMLG 326
NG +LG
Sbjct: 59 NGRNLLG 65
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 299
M+S GT+++VG L + K DLE F YGKL + + FIE+E+ ++AE+A
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPRDAEEAMR 57
Query: 300 AMNGTEMLGATLKVEISR 353
N ++ G+ + VE R
Sbjct: 58 RENNRKLFGSRIVVEYVR 75
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 144 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMN 308
YVGGL E + ++ L F +G + V + ++ GF F+EFE ++ A MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 309 GTEMLGATLKVEISR 353
+E+ G T++V +++
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/66 (30%), Positives = 40/66 (60%)
Frame = +3
Query: 156 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 335
L +++ D+E+ YGK+ + + G+ F+EF++ ++AEDA +NG +++G +
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERV 752
Query: 336 KVEISR 353
VE S+
Sbjct: 753 VVEFSK 758
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
V V L +DL+ F KYGK+ G +EFE+ + A ++ TE+
Sbjct: 800 VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTEL 859
Query: 321 LGATLKV 341
G ++V
Sbjct: 860 GGRRIRV 866
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSV---WVALNPP--GFAFIEFENLQEAEDACSA 302
RVYVG + +++E + F +G +N + W LN GFAF+E++ + A+ A
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 162
Query: 303 MNGTEMLGATLKV 341
MNG + G +KV
Sbjct: 163 MNGVLLGGRNIKV 175
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 302
R+Y+ + + ++D++ F+ +GK+ ++ P G+ FIE+EN Q A DA ++
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 303 MNGTEMLGATLKV 341
MN ++ G L+V
Sbjct: 260 MNLFDLGGQFLRV 272
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 293
G TR+YVG L I + ++ F+ +G ++SV + + G+ F++F + A+ A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 294 CSAMNGTEMLGATLKV 341
MNG E+ G LK+
Sbjct: 300 MEQMNGFELAGRPLKI 315
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 299
G +Y+ L + I E L EF YG ++S V N GF F+ F + +EA A +
Sbjct: 211 GVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVT 270
Query: 300 AMNGTEMLGATLKVEISRK 356
MNG ++ L V ++++
Sbjct: 271 EMNGRILISKPLYVALAQR 289
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
T VYV + + E ++ + GK+ S+ V +P G F F+ FE +EAE+A +
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 303 MNGTEMLGATL 335
+NG E+ G L
Sbjct: 169 LNGKEIGGRRL 179
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
TR++VGGL I +LEREFD++G + + A+I +++L A A M G
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRIDYR-KGGDHAYILYDSLDAASVAAREMRGF 376
Query: 315 EMLGATLKVEISRK 356
+M L+++ + K
Sbjct: 377 QMGDRRLRIDFADK 390
Score = 34.7 bits (76), Expect = 0.045
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 308
++VG L GI +DL F+K+G + V + G +AF++F +L A A AM
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 309 G 311
G
Sbjct: 299 G 299
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSAM 305
+ Y+G L + + DL+ F +Y ++ ++ P GFAF+ F + + EDA + +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 306 NGTEMLGATLKVEISR 353
+G E G ++KV +R
Sbjct: 291 DGQEFDGRSMKVNQAR 306
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++VGG+ + ++ +ER F +YG++ V V A + F+++ A A + M G M
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV-VINRVTNQALVSFDSVDSATIAHAQMKGRTM 388
Query: 321 LGATLKVE-ISRK 356
++VE +SR+
Sbjct: 389 FSRRVRVEFVSRE 401
Score = 33.9 bits (74), Expect = 0.079
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMN 308
++VG L E I++ED+ + F +YG++ SV + + +F++F +++ A A + N
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKAHESPN 67
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 129 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG--FAFIEFENLQEAEDACS 299
G TR ++VG + + DL+ F++YG++ V + P +AF++F L A A
Sbjct: 246 GCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARR 305
Query: 300 AMN 308
M+
Sbjct: 306 KMD 308
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 287
+++VGGL KE L+ F KYG+L V + ++ P GFAF++F++ EA+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 308
++V L K+ ++E F K+G + V + N P G+ ++E+E A A ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 309 GTEMLGATLKVEIS 350
TE+ G T+ V +S
Sbjct: 233 KTEVKGRTISVALS 246
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 293
G T + V L EDL++ F KYG L +++ + GFAF+ F ++AEDA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 294 CSAMNGT 314
M+ T
Sbjct: 74 MDCMDAT 80
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T++YV L + K+ ++ F YG++ +V + + GFA++E+ + +E E A
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 300 AMNGTEMLGATLKVE 344
M+G ++ G + V+
Sbjct: 1217 HMDGGQIDGQEIAVQ 1231
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
+VY G L ++DLE +GK+ V G+A++ F+ ++A+ A +A+N +E
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDFK---EGYAYVVFKENKDADRAVAALNNSE 60
Query: 318 MLGATLKVEISRK 356
GA + +E +++
Sbjct: 61 FHGAKILMEKAKE 73
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 138 RVYVGGLV-EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
R+++G L + I ++DLE F ++GK+ + N F F++FE + A++A + +G
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHGR 103
Query: 315 EMLGATLKVEI 347
+ G + V I
Sbjct: 104 IINGKKIDVRI 114
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE-FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
++V L K L +E F + G + VA+NP GFAF+++ +EAE A
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 303 MNGTEMLGATLKV 341
NG ++ G+ ++V
Sbjct: 267 HNGRQVEGSNIRV 279
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 308
V++GGL E + + L F+K+G + V + + G F+ F + AE A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 309 GTEMLGATLKVEISRK 356
G ++LG ++ + +++
Sbjct: 586 GCDILGKIVETKYAKE 601
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T + + + + +ED+++ F G + S + + G+AF+ ++N +A A
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVR 86
Query: 300 AMNGTEMLGATLKVEISR 353
MNG + TLKV +R
Sbjct: 87 EMNGARLQNKTLKVSFAR 104
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 281
T G+ +++ L + DL + F +G + S V ++ F F+ ++N+
Sbjct: 271 TPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMS 330
Query: 282 AEDACSAMNGTEMLGATLKVEISR 353
A++A MNG ++ LKV++ R
Sbjct: 331 AQNAIQHMNGFQIGAKRLKVQLKR 354
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
GF F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 150 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
GGL+ G+ +E + R F YG L V V L ++F+ +++ A +A +NG
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKSHNNALNAMRNLNG 107
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
+Y+G + G + ++++ F+++G +N + ++ + G+AF+EF + A+ A M
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 306 NGTEMLGATLK 338
+ M G LK
Sbjct: 160 HNYMMFGRLLK 170
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 34.7 bits (76), Expect = 0.045
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
G +YV + + + + + + F+ YG + + + + P G F+ ++ EA+ A
Sbjct: 132 GANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAI 191
Query: 297 SAMNGTEMLGATLKVEI 347
S+++GT G+T+ ++I
Sbjct: 192 SSLSGTFFPGSTMGLQI 208
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T + V + + + + F+ LN+ + + P GF F+++ ++A+ A
Sbjct: 47 TTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAID 106
Query: 300 AMNGTEMLGATLKVEISR 353
+NG + LKV SR
Sbjct: 107 KLNGFTIGNKVLKVAFSR 124
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDAC 296
G +YV + +E + F + G +N V W GF F+ +EA++A
Sbjct: 274 GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAI 333
Query: 297 SAMNG 311
+NG
Sbjct: 334 QTLNG 338
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 34.3 bits (75), Expect = 0.060
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
V+VG + +E L+ F + G + S + + P G+ F E+++ + A A +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 306 NGTEMLGATLKVE 344
NG E+ G L+V+
Sbjct: 87 NGYELNGRALRVD 99
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.10
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
VY+ L I +E L+ E+ +YG ++ V +AF+ F A A +G EM
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRV---KKLKDYAFVHFTERDHALKAIEETDGKEM 387
Query: 321 LGATLKVEIS 350
G LK+E S
Sbjct: 388 DG--LKIEAS 395
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACS 299
++V++G + +++L F++ G + + ++P GFAF F N EA++A
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 300 AMNGTEML-GATLKVEIS 350
++ E+ G L V IS
Sbjct: 212 KLDNKEIRPGKRLGVCIS 229
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVALNPP------GFAFIEFENLQ 278
+S +R++VG + + K+++ EF K L+ V V L+ GFAF+E+E+ Q
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQ 287
Query: 279 EA 284
A
Sbjct: 288 AA 289
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS-AMNG 311
T +YVGGL + ++DL F ++G+L S+ + + AF+ F + AE A + N
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISM-VPRQNCAFVCFTSRAAAEAAADRSFNK 362
Query: 312 TEMLGATLKV 341
+ G LK+
Sbjct: 363 LILKGRRLKI 372
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +3
Query: 138 RVYVGGLVEGIKKED--------LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 293
+++VGGL E KED LE + DK + GFAF+E N +A++
Sbjct: 109 KIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQADEL 168
Query: 294 C 296
C
Sbjct: 169 C 169
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC-- 296
+++VGGL E L F+ YG+L V V + GF ++ F + + +
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKD 74
Query: 297 SAMNGTEMLGATLKVEISR 353
NG + +VE+ R
Sbjct: 75 KVENGAHRIDGK-EVEVKR 92
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 302
+Y+ L E IKKE+L++ F ++G + + L G AF+ F+++ A +A +
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 303 MNGTEMLGATLKVEISR 353
M G ++++ ++
Sbjct: 69 MQGFPFYDKPMRIQYAK 85
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPG---FAFIEFENLQEAEDA 293
GG ++V L + DL+ F +YGK+ + N PG F + +EA
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKC 406
Query: 294 CSAMNGTEMLGATLKVE 344
++ TE+ G + V+
Sbjct: 407 IQHLHRTELHGRAITVD 423
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 156 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGTEML 323
+V+ + E++E DK + +W+ +P G + + +E+ A A NG + +
Sbjct: 185 VVQVMAVEEVEEMIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFM 244
Query: 324 GATLKVEIS 350
G ++KVE++
Sbjct: 245 GQSIKVELA 253
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG 311
ED+ F++YG + VWV + G +++F A AC M+G
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACS 299
T +Y+ GL +DL R KYG + S L+ G+ F++FE+ A+ A +
Sbjct: 100 TNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 300 AM 305
A+
Sbjct: 160 AL 161
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSA 302
T +Y+ L + + LE F KYGK+ S + N G F E+ ++ E
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKD 238
Query: 303 MN 308
N
Sbjct: 239 FN 240
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFI 260
T VYVG L +K +L++ F +YG + V + G+AFI
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSV 224
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL------NPPGFAFIEFENLQEAEDA 293
G +++G L + ++ L F +G + + N GFAFI F + ++ A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 294 CSAMNGTEMLGATLKVEISRK 356
AMNG + + V + K
Sbjct: 159 IEAMNGQYLCNRPITVSYAFK 179
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 356
GF F+ EN ++ ED +G E G LKV + K
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASK 120
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 209
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 248
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 231 ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
A P G+AFIE+E+ ++ A +G ++ G + V++ R
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVER 83
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 308
+Y+ I+K LE F YG + + + GF ++ +EN AE A A+
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYEN---AESAQRALA 121
Query: 309 GTEML 323
GT ++
Sbjct: 122 GTHII 126
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 346 ISTFKVAPNI-SVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFP 206
+S+ K+ P + S+ F AL +S A+ + SN + P G+SAT P
Sbjct: 508 LSSPKIDPLLDSLGFGALGSSFANTEISNVVAKSPSGYSATSPSRRLP 555
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---------NPP---GFAFIEFENLQE 281
+++VGGL +ED++ F+ + N + + NP GFAF+ F+N +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 282 AEDACS 299
E C+
Sbjct: 200 VEKVCA 205
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKL 215
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLN 218
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLER---EFDKYGKLNSVWVALNP--PGFAFIEFENLQEAEDACSAM 305
+++ L +K+EDL R F + G V+ + G AF+ F + + A A S +
Sbjct: 116 LFLKNLSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLV 175
Query: 306 NGTEMLGATLKVEISRK 356
NG + G + +E RK
Sbjct: 176 NGYRLKGRPVIIEFGRK 192
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMN 308
GFAFIEFE+ Q+AE N
Sbjct: 130 GFAFIEFESKQQAEHVVQMFN 150
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 382 SEVGAAVTSGVVVHSEVREEAGLTTH 459
S+VG+ VT +VVH +EEA L+ H
Sbjct: 35 SDVGSQVTLLLVVHESKKEEAKLSLH 60
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 240 PPGFAFIEFENLQEAEDACSAMNGT-EMLG 326
P GFAF+EF N +EA A A N E+ G
Sbjct: 623 PLGFAFVEFTNHKEALAALRATNNNPELFG 652
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 321 TSQYHSSRYTHLPPPASS 268
T++YH ++T LPPP+ S
Sbjct: 169 TTEYHPEQHTPLPPPSKS 186
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 350
GF F+ F EA A +NGT + G KVE+S
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGR--KVEVS 157
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
++++GGL + ++ ++ +G+L + + + G+AF E+ +L + A
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQG 733
Query: 303 MNGTEM 320
+NG ++
Sbjct: 734 LNGMQL 739
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 298 LHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 158
L+ S+ CK S+ K+ P S++ + S+ Y S+ +SSFL S+
Sbjct: 745 LYKCSSLCKSSSLYKSSPLHKSSSLYKSSYLYKSSYLYKSSFLYKSS 791
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 379 GSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGR 483
G VGA++TS V +RE+ G TT+TV G+
Sbjct: 163 GVFVGASMTSVV---QRIREDLGATTYTVTCQYGK 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,464
Number of Sequences: 59808
Number of extensions: 225837
Number of successful extensions: 643
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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