Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1293
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 81 3e-16
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 81 3e-16
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 81 3e-16
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 59 2e-09
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 59 2e-09
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 56 1e-08
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 56 1e-08
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 56 1e-08
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 48 3e-06
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 48 4e-06
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 48 5e-06
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 48 5e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 48 5e-06
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 46 1e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 44 6e-05
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 43 1e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 43 1e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 40 0.001
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 39 0.002
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 39 0.002
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 39 0.002
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 39 0.002
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 39 0.002
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 39 0.002
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 39 0.002
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 39 0.002
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 39 0.002
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 38 0.003
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 38 0.003
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 38 0.003
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 38 0.003
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 38 0.003
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 38 0.003
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 38 0.004
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 38 0.004
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 38 0.004
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.006
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 37 0.007
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 37 0.007
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 37 0.007
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 37 0.007
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 37 0.007
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 37 0.010
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.017
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 36 0.017
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 36 0.017
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.030
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.030
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.052
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.052
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.052
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.091
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.12
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.37
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.37
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.37
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 0.37
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.64
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.64
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.64
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.64
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.64
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.64
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.85
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.85
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 30 0.85
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 30 1.1
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 30 1.1
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 30 1.1
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 2.0
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 29 2.0
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 2.0
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 2.0
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 2.0
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 29 2.0
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 28 3.4
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 28 4.5
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 28 4.5
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 27 6.0
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 27 7.9
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 7.9
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 81.4 bits (192), Expect = 3e-16
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 318 MLGATLKVEIS 350
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 81.4 bits (192), Expect = 3e-16
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 318 MLGATLKVEIS 350
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 81.4 bits (192), Expect = 3e-16
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 318 MLGATLKVEIS 350
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = +3
Query: 120 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 287
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 288 DACSAMNGTEMLGATLKVEISR 353
DA A +G E G ++VE +R
Sbjct: 61 DAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = +3
Query: 120 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 287
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 288 DACSAMNGTEMLGATLKVEISR 353
DA A +G E G ++VE +R
Sbjct: 61 DAVRARDGYEFDGRRIRVEFTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 318 MLGATLK--VEISR 353
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 318 MLGATLK--VEISR 353
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 318 MLGATLK--VEISR 353
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 318 MLGATLKVEISR 353
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 318 MLGATLKVEISR 353
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 318 MLGATLKVEISR 353
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 317
RVY+G L D+E F YGKL+ V + GF F++F++ ++A+DA +NG E
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKE 59
Query: 318 MLGATLKVEISRK 356
+ G + +E R+
Sbjct: 60 LCGERVILEFPRR 72
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 183 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 290
SG VYVG +E+L F G++N+V + + P GFAFIEF A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 291 ACSAMNGTEMLGATLKVEISRK 356
A MNG E G L+V ++ K
Sbjct: 62 AVEQMNGAEFNGRPLRVNLANK 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 305
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 306 NGTEMLGATLKVEISR 353
+ + + G LK+ + R
Sbjct: 273 HDSTIEGTDLKLHVCR 288
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 300 AMNGTEMLGATLKVEISRK 356
MN + L V I ++
Sbjct: 376 EMNSKMVCSKPLYVAIGQR 394
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 305
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 306 NGTEMLGATLKVEISR 353
+ + + G LK+ + R
Sbjct: 213 HDSTIEGTDLKLHVCR 228
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 315
Query: 300 AMNGTEMLGATLKVEISRK 356
MN + L V I+++
Sbjct: 316 EMNSKMVCSKPLYVAIAQR 334
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 305
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 306 NGTEMLGATLKVEISR 353
+ + + G LK+ + R
Sbjct: 210 HDSTIEGTDLKLHVCR 225
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 312
Query: 300 AMNGTEMLGATLKVEISRK 356
MN + L V I+++
Sbjct: 313 EMNSKMVCSKPLYVAIAQR 331
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 305
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 306 NGTEMLGATLKVEISR 353
+ + + G LK+ + R
Sbjct: 273 HDSTIEGTDLKLHVCR 288
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 300 AMNGTEMLGATLKVEISRK 356
MN + L V I+++
Sbjct: 376 EMNSKMVCSKPLYVAIAQR 394
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G V+V + E ++D+ +F +YGK+ ++ + L+ G+A +E+E +EA +A
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
Query: 297 SAMNGTEMLGATLKVE 344
N T++LG +KV+
Sbjct: 114 DQSNDTDLLGQNVKVD 129
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 299
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 300 AMNGTEMLGATLKV 341
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 302
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 303 MNGTEMLGATLK 338
MN ++ G L+
Sbjct: 268 MNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 299
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 300 AMNGTEMLGATLKV 341
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 302
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 303 MNGTEMLGATLKV 341
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 299
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 300 AMNGTEMLGATLKV 341
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 302
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 303 MNGTEMLGATLKV 341
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 44.0 bits (99), Expect = 6e-05
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 284
M+S G VYVG + +E++ F G +N+V + + P GFAF+EF A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 285 EDACSAMNGTEMLGATLKVEISRK 356
+ A +NG G L+V + K
Sbjct: 61 QRAVEQLNGVAFNGRNLRVNYANK 84
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
+YVGG E + ++ L F +G + ++ + ++ GF F+EF+ ++A A M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 306 NGTEMLGATLKVEISR 353
N +E+ G T++V +R
Sbjct: 73 NESELFGKTIRVNFAR 88
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 302
++ T VYVG + + ++++ R FD++G +N V G+AF++FE + A A
Sbjct: 252 AADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQ 309
Query: 303 MNGTEMLGATLK 338
MN ++ G ++
Sbjct: 310 MNNADIGGQIVR 321
Score = 31.9 bits (69), Expect = 0.28
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYG---KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
++V L I E L F++ G K ++ LN P +AF+EF + +A A + NG
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNG 100
Query: 312 TEMLGATLKV 341
E+L + V
Sbjct: 101 RELLEKEMHV 110
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
V+VG L I L F K+G+++ + + G+ F+ + ++AE A M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 306 NGTEMLGATLK 338
NG + T++
Sbjct: 194 NGAWLGRRTIR 204
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
V+VG + + ++ + F K G + S+ + + P G+ FIEF ++Q AE A +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 306 NGTEMLGATLKVE 344
NG E+ G L+V+
Sbjct: 80 NGYELSGRILRVD 92
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
G VYVG ++DL F + G +++V + + P GFAF+EF A+ A
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 297 SAMNGTEMLGATLKVEISR 353
NG + G L+V +++
Sbjct: 63 DQFNGVDFNGRALRVNLAQ 81
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 305
V+VG L + + E L+ F K+G+++ V G+ F+ F N Q AE+A + M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 306 NG 311
NG
Sbjct: 197 NG 198
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T VYVG + + DL F YG + V + +AF+ +E + A A MNG
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGK 295
Query: 315 EMLGATLKVEISR 353
EM G ++ R
Sbjct: 296 EMAGNQVRCSWGR 308
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 147 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 311
V L + + +++L F K G++ +++A + P GFAF+ FE+ +A A + +N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 312 TEMLGATLKVEISR 353
M LKVE +R
Sbjct: 240 IRMYHMVLKVEWTR 253
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMN 308
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 309 GTEMLGATLKV 341
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMN 308
++VG + + L REF+ YGK+ + + A P G+AFIE+ + E A +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 309 GTEMLGATLKVEISR 353
G ++ G L V+ R
Sbjct: 166 GIKVDGKRLVVDYER 180
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 293
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 293
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 229 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDA 293
++VG + +K+ ++ F+++GK+ V + +AF+ F+ + +A A
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 201
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMN 308
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 309 GTEMLGATLKV 341
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 111 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 290
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 120 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 177
Query: 291 ACSAMNGTEMLGATLK 338
A MN ++ G ++
Sbjct: 178 AIVQMNNQDVGGQLVR 193
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 305
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 306 NG 311
NG
Sbjct: 84 NG 85
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 111 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 290
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 130 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 187
Query: 291 ACSAMNGTEMLGATLK 338
A MN ++ G ++
Sbjct: 188 AIVQMNNQDVGGQLVR 203
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 305
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 306 NG 311
NG
Sbjct: 94 NG 95
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 111 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 290
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 233 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 290
Query: 291 ACSAMNGTEMLGATLK 338
A MN ++ G ++
Sbjct: 291 AIVQMNNQDVGGQLVR 306
Score = 31.1 bits (67), Expect = 0.48
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNG 311
+YVG L + ++ + F++ G + V N P +AF+EF + +A A MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNK 106
Query: 312 TEMLGATLKV 341
+L +KV
Sbjct: 107 RLLLDREMKV 116
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 305
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 306 NG 311
NG
Sbjct: 197 NG 198
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 111 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 290
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 201 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 258
Query: 291 ACSAMNGTEMLGATLK 338
A MN ++ G ++
Sbjct: 259 AIVQMNNQDVGGQLVR 274
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 305
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 306 NG 311
NG
Sbjct: 165 NG 166
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T V+V E + +E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 303 MNGTEMLGATLKVEISR 353
+N + + G K+ + R
Sbjct: 298 LNDSILEGTDCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T V+V E + +E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 303 MNGTEMLGATLKVEISR 353
+N + + G K+ + R
Sbjct: 298 LNDSILEGTDCKLSVCR 314
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACS 299
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 300 AMNGTEMLGATLKV 341
++G+ + G ++V
Sbjct: 211 ELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACS 299
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 300 AMNGTEMLGATLKV 341
++G+ + G ++V
Sbjct: 211 ELHGSMIEGRKIEV 224
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 138 RVYVGGLVEGI-KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
RV++G + I ++D+ F +GK+ +V GF F++F A+++C ++NG
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGM 142
Query: 315 EMLGATLKVEIS 350
L V ++
Sbjct: 143 SWKACCLDVHLA 154
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAED 290
+ G T V V L I ++ + F+ +G++ + + ++ GFA I F N +A+
Sbjct: 123 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 182
Query: 291 ACSAMNGTEMLGATLKVEISRK 356
+C +N E+ G +++ I ++
Sbjct: 183 SCEQLNNFELAGRCIRLSIKQE 204
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAED 290
+ G T V V L I ++ + F+ +G++ + + ++ GFA I F N +A+
Sbjct: 268 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 327
Query: 291 ACSAMNGTEMLGATLKVEISRK 356
+C +N E+ G +++ I ++
Sbjct: 328 SCEQLNNFELAGRCIRLSIKQE 349
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 293
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
Query: 294 CSAMNGTEMLGATLKVEIS 350
+ NGT + G ++V ++
Sbjct: 156 RAEFNGTTIEGRRVEVNLA 174
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEA 284
+S RV + L + K LE F YG + +V + + G+ ++E++NL++A
Sbjct: 129 ASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDA 188
Query: 285 EDACSAMNGTEMLGATLKVEIS 350
E + M+G ++ G + VE++
Sbjct: 189 EKSIKHMDGGQIDGMAVHVEMT 210
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDA 293
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
Query: 294 CSAMNGTEMLGATLKVEIS 350
+ NGT + G ++V ++
Sbjct: 156 RAEFNGTTIEGRRVEVNLA 174
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
VYVG + G E++E+ F G ++ V + + P GFA++EF + ++A AM
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AM 138
Query: 306 NGTEMLGATLKVEISR 353
+ + G +KV+ R
Sbjct: 139 TDSLLRGRQIKVDPKR 154
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 334 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 393
Query: 297 SAMNGTEMLGATLKVEI 347
SAMNG ++ LKV++
Sbjct: 394 SAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 297 SAMNGTEMLGATLKVEI 347
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 297 SAMNGTEMLGATLKVEI 347
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 427 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 486
Query: 297 SAMNGTEMLGATLKVEI 347
SAMNG ++ LKV++
Sbjct: 487 SAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 297 SAMNGTEMLGATLKVEI 347
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G +YVG + + ++ L F+K GK+ + + ++P G+AF+ + N ++A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 297 SAMNGTEM-LGATLKVEIS 350
+G E+ G LKV +S
Sbjct: 259 KTYDGHEISTGKPLKVNVS 277
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.9 bits (79), Expect = 0.017
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 302
R+++ L K++DL+ F KYG+++ V V ++ GFA +EF + A A SA
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 303 MNGTEMLGATLKV 341
++G G + +
Sbjct: 340 LDGYVFKGRMMHI 352
Score = 30.7 bits (66), Expect = 0.64
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 302
TR+ V L ++ L + F+KYG+++ + GFAF+ F + A +A +
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 303 MNGTEMLGATLKVEISR 353
N T L VE R
Sbjct: 63 SNQTFFNSKKLTVEECR 79
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSA 302
+V+VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 303 MNGT 314
T
Sbjct: 171 TKQT 174
Score = 34.7 bits (76), Expect = 0.039
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQE 281
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 282 AEDACSAMNGTEMLGATLKVE 344
+ A +A T + G +++V+
Sbjct: 83 CKLALAAREQT-IKGKSVEVK 102
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSA 302
+V+VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 303 MNGT 314
T
Sbjct: 171 TKQT 174
Score = 34.7 bits (76), Expect = 0.039
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQE 281
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 282 AEDACSAMNGTEMLGATLKVE 344
+ A +A T + G +++V+
Sbjct: 83 CKLALAAREQT-IKGKSVEVK 102
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.030
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAM 305
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 306 NGTEMLGATLKV 341
N ++ G +KV
Sbjct: 75 NMIKLYGKPIKV 86
Score = 31.5 bits (68), Expect = 0.37
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDA 293
G ++VG L + ++ L F +G + V + GFAFI F + + ++ A
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158
Query: 294 CSAMNGTEMLGATLKVEISRK 356
AMNG + + V + K
Sbjct: 159 LEAMNGQFLCNRAITVSYAFK 179
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.030
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAM 305
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 306 NGTEMLGATLKV 341
N ++ G +KV
Sbjct: 85 NMIKLYGKPIKV 96
Score = 31.5 bits (68), Expect = 0.37
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDA 293
G ++VG L + ++ L F +G + V + GFAFI F + + ++ A
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 168
Query: 294 CSAMNGTEMLGATLKVEISRK 356
AMNG + + V + K
Sbjct: 169 LEAMNGQFLCNRAITVSYAFK 189
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T + + L +G+ +E++ F G++ S + + G+ F+ + ++A A S
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 300 AMNGTEMLGATLKVEISR 353
+ NG + T+KV +R
Sbjct: 102 SFNGLRLQNKTIKVSYAR 119
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 296
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 296
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.5 bits (73), Expect = 0.091
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++ L + E LE F+++ L + + N PG AF+EF+ A A + +N ++
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKI 193
Query: 321 LGA-TLKVEISRK 356
T++V+ ++K
Sbjct: 194 SAEHTMRVDYAKK 206
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSA 302
+YV L E +KK++L+R F ++G++ + G A I F+ + A +A A
Sbjct: 10 IYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRA 69
Query: 303 MNGTEMLGATLKVEISRK 356
+ G G ++++ +R+
Sbjct: 70 LQGFPFYGKPMRIQYARE 87
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
++ + EG + E ++ F ++ L V N FAFIE+E+ +E A A++
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
GFA++ FEN Q+ A S +NG + LKV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 342 EISR 353
+ S+
Sbjct: 315 DFSQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 342 EISR 353
+ S+
Sbjct: 315 DFSQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
Query: 342 EISR 353
+ S+
Sbjct: 246 DFSQ 249
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 227
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNG 311
+Y+ L I E++ F K+G + + V G AF+ +E++ +A+ AC ++G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.1 bits (67), Expect = 0.48
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+YVG L K++ + F + G + V + L+ P GF F+E+ ++AE A +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 306 NGTEM 320
+ T M
Sbjct: 99 SNTRM 103
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 195 FDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 350
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 252 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 353
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 252 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 353
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 174 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
KE++ + KYG + V V N P G + F +E++ A ++G + G L E+
Sbjct: 335 KEEMTQSCQKYGIVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAEL 393
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 325 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 149
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 148 TYTRVP 131
+ R+P
Sbjct: 363 VHNRLP 368
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 325 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 149
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 148 TYTRVP 131
+ R+P
Sbjct: 363 VHNRLP 368
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 325 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 149
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 148 TYTRVP 131
+ R+P
Sbjct: 363 VHNRLP 368
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAM 305
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 306 NGTEMLGATLKVEIS 350
NG ++ L V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAED 290
R++VGG + +L F+K+ + V + + G+ FI FE +AE+
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 121
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAM 305
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 306 NGTEMLGATLKVEIS 350
NG ++ L V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAM 305
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 306 NGTEMLGATLKVEIS 350
NG ++ L V+++
Sbjct: 327 NGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAM 305
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 306 NGTEMLGATLKVEIS 350
NG ++ L V+++
Sbjct: 330 NGMQLGDKQLVVQLA 344
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAED 290
R++VGG + +L F+K+ + V + + G+ FI FE +AE+
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYG----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
+++G + +E L + F + G K+ V+V G+ FIEF EA +N
Sbjct: 70 LWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDELKGYCFIEFITFDEARQTLYDLN 129
Query: 309 GTEMLG 326
G + G
Sbjct: 130 GNRIPG 135
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 240 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
P GF F + L A MN T+ GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 355 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 486
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 240 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 356
P GF F + L A MN T+ GATL+VE K
Sbjct: 296 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLRVETDGK 334
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+Y+GGL + + D+ F +YG++ ++ + + GFAF+ +++ + A
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 306 NGTEMLGATLKVE 344
NG + ++V+
Sbjct: 100 NGISLHKRMIRVD 112
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVW---VALNPPGFAFIEFENLQEAEDACSAMNG 311
+YV E + +E LE F + G + V V + FA +EFE+ A MNG
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 312 TEMLGATLKVE 344
+ L+V+
Sbjct: 75 VRLFNQELQVK 85
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 290
RVY+G D E F YGKL + N G +F++ +A+D
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADD 52
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +3
Query: 165 GIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNG 311
G +++L F ++G + + VA N G+A++ F+N AE A +MNG
Sbjct: 42 GFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = -3
Query: 271 FSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTR--------PPTYTRVPPEL 122
FS P +A+ + FS L+N+ + S+ +P++ PPT RVPP++
Sbjct: 2 FSRRTTPSPSITTASSSTFSISNLTNNNATSTSDLPASAISNIVPQIPPTPRRVPPKI 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,723
Number of Sequences: 27780
Number of extensions: 171322
Number of successful extensions: 669
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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