Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1293
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 2e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 2e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 2e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 5e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 3e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 3e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 57 6e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 54 6e-08
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 6e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 54 6e-08
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 9e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 48 5e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 6e-06
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 9e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 47 9e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 5e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 44 6e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 44 6e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 8e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 1e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 1e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 1e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 1e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 43 1e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 43 1e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 1e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 43 1e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 2e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 2e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 3e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 4e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 4e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 4e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 6e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 6e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 6e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 6e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 6e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 6e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 6e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 6e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 7e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 40 7e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 7e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.001
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.001
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.002
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 39 0.002
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.003
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.004
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.005
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.005
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.005
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.005
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.005
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.005
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.005
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.007
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.007
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.007
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.009
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.009
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.009
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.012
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.016
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.016
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.016
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.016
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.016
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.016
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.016
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.021
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.021
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.021
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.021
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.021
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.028
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.028
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.028
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 35 0.028
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.037
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.037
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.037
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.037
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.037
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.049
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.065
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.065
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.085
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.085
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.085
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.085
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.11
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.11
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.11
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.11
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.11
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.11
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.15
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.20
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.20
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.20
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.20
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.20
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.20
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.20
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.26
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.26
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.26
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.34
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.34
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.34
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.34
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.34
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.46
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.46
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.46
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.46
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.46
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.60
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 0.60
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.60
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.60
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.60
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 31 0.60
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.60
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 0.80
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 0.80
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 0.80
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 1.1
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.1
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.1
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.1
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.1
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 1.4
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 1.4
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 1.4
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 1.4
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.8
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 1.8
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.4
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 2.4
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 2.4
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 2.4
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 3.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 3.2
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 3.2
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 3.2
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 3.2
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 3.2
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 3.2
At1g05510.1 68414.m00563 expressed protein 28 3.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 4.2
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 4.2
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 28 4.2
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 5.6
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 27 5.6
At3g08670.1 68416.m01007 expressed protein 27 5.6
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 27 5.6
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 27 7.4
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 27 7.4
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 7.4
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 7.4
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei... 27 7.4
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 27 7.4
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 27 9.8
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 9.8
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 9.8
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 9.8
At1g03020.1 68414.m00274 glutaredoxin family protein contains IN... 27 9.8
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.0 bits (134), Expect = 3e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.0 bits (134), Expect = 3e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.2 bits (132), Expect = 6e-09
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 290
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 291 ACSAMNGTEMLGATLKVEIS 350
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 309 GTEMLGATLKVEISR 353
G + G+ + VE SR
Sbjct: 66 GRDFDGSRITVEASR 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGT 314
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 315 EMLGATLKVEIS 350
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 309 GTEMLGATLKVEISR 353
G + G+ + VE SR
Sbjct: 66 GRDFDGSRITVEFSR 80
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 315 EMLGATLKVEISR 353
+ T+++ R
Sbjct: 363 VIGKQTVRLSWGR 375
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 315 EMLGATLKVEISR 353
+ T+++ R
Sbjct: 365 VIGKQTVRLSWGR 377
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 299
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 300 AMNGTEMLGATLKV 341
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 299
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 300 AMNGTEMLGATLKV 341
M+G E+ + V
Sbjct: 72 HMHGRELGNKVISV 85
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 305
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 306 NGTEMLGATLKVEISR 353
NGT + T+++ R
Sbjct: 383 NGTVIGKNTVRLSWGR 398
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 47.6 bits (108), Expect = 5e-06
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 321 LGATLKVEISR 353
G+ L+V+ R
Sbjct: 310 GGSFLRVDFLR 320
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 321 LG 326
G
Sbjct: 79 NG 80
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 6e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 174 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 326
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 290
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 291 ACSAMNGTEMLGATLKV 341
A + E+ G +KV
Sbjct: 341 ALNLNGQLEIAGRAIKV 357
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 9e-06
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 297 SAMNGTEMLGATLKVE 344
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.8 bits (106), Expect = 9e-06
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 293
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 294 CSAMNGTEMLG 326
S MNG +M+G
Sbjct: 389 LSEMNG-KMIG 398
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 303 MNGTEMLGATLKVEISRK 356
MNG + L V ++K
Sbjct: 289 MNGISLGDDVLYVGRAQK 306
Score = 33.5 bits (73), Expect = 0.085
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 284
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 285 EDACSAMNGTEM 320
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 356
G+A+I F N +A A A+N T + +++ +S +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 305
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESL 376
Query: 306 NGTEMLGATLKVEISR 353
NGT + T+++ R
Sbjct: 377 NGTVIGKNTVRLSWGR 392
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 303 MNG 311
+NG
Sbjct: 89 LNG 91
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 312 TEMLGATLKVEISR 353
TE+ G +K+E SR
Sbjct: 281 TEIAGKRIKLEHSR 294
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 302
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 303 MNGTEMLGATLKVE 344
MNG ++ G T+ V+
Sbjct: 68 MNGMDLDGRTITVD 81
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 342 EISRK 356
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 317
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 318 -MLGATLKVE 344
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 342 EISRK 356
E + K
Sbjct: 163 EYAVK 167
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 317
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 318 -MLGATLKVE 344
G L+VE
Sbjct: 61 GRTGRRLRVE 70
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 293
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 350
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 351 RK 356
K
Sbjct: 163 LK 164
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 297 SAMNGTEMLG 326
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 297 SAMNGTEMLG 326
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 287
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 288 DACSAMNGTEMLGATLKV 341
A +++NG ++ G ++V
Sbjct: 305 KAINSLNGADLDGRQIRV 322
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 303 MNGTEMLGATLKV 341
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 287
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 288 DACSAMNGTEMLGATLKV 341
A +++NG ++ G ++V
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 303 MNGTEMLGATLKV 341
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 284
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 285 EDACSAMNGTEMLGATLKV 341
+DA M+G + G ++V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 342 EISRK 356
E + K
Sbjct: 123 EYAVK 127
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 342 EISRK 356
E + K
Sbjct: 164 EYAVK 168
Score = 41.5 bits (93), Expect = 3e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 321 --LGATLKVE 344
G L+VE
Sbjct: 61 GRKGRRLRVE 70
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 302
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 303 MNGTEMLGATLKV 341
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 287
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 288 DACSAMNGTEMLGATLKVEISRK 356
+NG + G +KV I+ K
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEK 154
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 287
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 288 DACSAMNGTEMLGATLKV 341
+A +++G ++ G ++V
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 33.5 bits (73), Expect = 0.085
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 290
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 291 ACSAMNGTEMLGATLKV 341
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 1e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +3
Query: 123 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 284
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 285 EDACSAMNGTEMLGATLKVE 344
A M+G + G + VE
Sbjct: 132 MKAIQGMHGKFLDGRVIFVE 151
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 297 SAMNGTEMLGATLKVEISRK 356
+++ + + G + VE +R+
Sbjct: 134 RSLDHSVLQGRVITVEKARR 153
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/73 (27%), Positives = 42/73 (57%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 315 EMLGATLKVEISR 353
++ G ++++ R
Sbjct: 337 QLGGQSIRLSWGR 349
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 303 MNG 311
+NG
Sbjct: 285 LNG 287
Score = 34.7 bits (76), Expect = 0.037
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 299
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 300 AMNGTEMLGATLKVEISRK 356
MNG + G L V ++++
Sbjct: 387 EMNGKMVGGKPLYVALAQR 405
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 293
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 294 CSAMNGTEMLGATLKVEISRK 356
S NG G L++E +++
Sbjct: 66 FSTYNGCVWKGGRLRLEKAKE 86
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 284
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 285 EDACSAMNGTEMLGATLKV 341
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 284
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 285 EDACSAMNGTEMLGATLKV 341
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 284
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 285 EDACSAMNGTEMLGATLKV 341
DA MNG E+ G + V
Sbjct: 61 RDAIEEMNGKELDGRVITV 79
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 300 AMNGTEMLGATLKV 341
A++G ++ G +KV
Sbjct: 100 ALDGRDLHGRVVKV 113
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 284
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 285 EDACSAMNGTEMLGATLKVEI 347
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 303 MNGTEMLGATLKVEISRK 356
++G + G +KV ++ +
Sbjct: 268 LDGQNLEGRAIKVNVAEE 285
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 303 MNGTEMLGATLKV 341
N E+ G L V
Sbjct: 174 FNSFEVNGRRLTV 186
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 303 MNG-TEMLGATLKV 341
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 174 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 308
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 302
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 303 MNGTEMLGATLKV 341
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S +
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-L 576
Query: 306 NGTEMLGATLKV 341
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 287
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 288 DACSAMNGTEMLGATLKVEIS 350
A AM+G +LG L++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 308
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 309 GTEMLGATLKVEISR 353
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 308
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 309 GTEMLGATLKVEISR 353
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNT 58
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 348 SR 353
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 348 SR 353
SR
Sbjct: 354 SR 355
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 299
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 300 AMNGTEMLG 326
MNG +M+G
Sbjct: 387 EMNG-KMIG 394
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 303 MNGTEM 320
MNG +
Sbjct: 285 MNGISL 290
Score = 33.5 bits (73), Expect = 0.085
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 284
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 285 EDACSAMNG 311
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 303 MNG 311
+NG
Sbjct: 284 LNG 286
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 293
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 294 CSAMNGTEMLGATLKVEISRK 356
+ MNG ++ L V ++++
Sbjct: 384 ITEMNGKMIVTKPLYVALAQR 404
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 302
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 303 MNG 311
MNG
Sbjct: 179 MNG 181
Score = 36.3 bits (80), Expect = 0.012
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 299
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 300 AMNGTEMLG 326
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.9 bits (69), Expect = 0.26
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 293
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 294 CSAMNGT 314
C+ NGT
Sbjct: 88 CNFHNGT 94
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 315 EMLGATLKVEISR 353
++ G T+++ R
Sbjct: 320 QLGGTTVRLSWGR 332
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 296
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 297 SAMNGTEMLGATLKVE 344
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 303 MNGTEMLGATLKVEISRK 356
++G + G ++V ++ +
Sbjct: 305 LDGQNLEGRAIRVNVAEE 322
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 302
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 303 MNGTEMLGATLKV 341
N ++ G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 300 AMNGTEMLGATLKV 341
M+G +LG L V
Sbjct: 97 QMDGYLLLGRELTV 110
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 300 AMNGTEMLGATLKV 341
M+G +LG L V
Sbjct: 96 HMDGYLLLGRELTV 109
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 305
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 306 NGTEMLGATLKVE 344
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 296
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 297 SAMNGTE 317
M+G +
Sbjct: 66 REMHGRD 72
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 300 AMNGTEMLGATLKVEI 347
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 302
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 303 MNGTEMLGATLKVEISRK 356
+NGT+ L V ++K
Sbjct: 261 VNGTKFGSKCLYVGRAQK 278
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 312 TEMLGATLKVEISR 353
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 321 LGATLKVEIS 350
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 312 TEMLGATLKVEISR 353
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/70 (17%), Positives = 32/70 (45%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 321 LGATLKVEIS 350
L + S
Sbjct: 230 RRRKLDIHFS 239
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 281
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 282 AEDACSAMNGTEMLGATLKVEISR 353
A++A + MNG ++ G LKV++ R
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQLKR 416
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 305
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 306 NGTEML 323
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +3
Query: 117 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 281
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 282 AEDACSAMNGTEMLGATLKVEISR 353
A++A + MNG ++ G LKV++ R
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQLKR 407
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 305
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 306 NGTEML 323
NG ++
Sbjct: 161 NGRHIM 166
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 308
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 309 GTEMLGATLKVEISR 353
+E+ G +KV R
Sbjct: 164 ESELHGRQIKVSAKR 178
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 300 AMNGTEMLGATLKV 341
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 300 AMNGTEMLGATLKVEISR 353
NG ++ G T+ V+ ++
Sbjct: 94 EFNGQQLNGRTIFVDYAK 111
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 284
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 285 EDACSAMNGT 314
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 293
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 294 CSAMNGTEMLGATLKV 341
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 293
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 294 CSAMNGTEMLGATLKV 341
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 293
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 294 CSAMNGTEMLGATLKV 341
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 300 AMNGTEMLGATLKVEIS 350
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 300 AMNGTEMLGATLKVEIS 350
M+G E+ G ++V ++
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 296
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 297 SAMNGTEMLGATLKVEIS 350
++ E G T++ +S
Sbjct: 175 EELHSKEFKGKTIRCSLS 192
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.007
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 296
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 297 SAMNGTEMLGATLKV 341
SA++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 303 MNGTEM 320
+ G ++
Sbjct: 262 LCGLQL 267
Score = 33.5 bits (73), Expect = 0.085
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 302
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 303 MNGTEMLGATLKVEISRK 356
+NG + G + V ++ +
Sbjct: 364 LNGFLVDGKPIVVRVAER 381
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 296
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 300 AMNGT 314
N T
Sbjct: 73 DPNPT 77
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 335
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 336 KVEIS 350
V ++
Sbjct: 119 TVVVA 123
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 305
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 306 NGTEMLGATLKVEISR 353
+ G V S+
Sbjct: 276 KSPMINGKKCGVTASQ 291
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 308
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 309 GTEMLGATLKV 341
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 314
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 315 EMLGATLKVEISRK 356
+ G + VE +++
Sbjct: 131 IVNGRLIFVETAKE 144
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 303 MNGTEMLGATLKVE 344
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 303 MNGTEMLGATLKVE 344
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 303 MNGTEMLGATLKVE 344
E+ G ++V+
Sbjct: 170 KTFHELNGKLVEVK 183
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 302
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 303 MNGTEMLGATLKVEIS 350
MNG E+ G L++ ++
Sbjct: 280 MNGVEVEGRALRLNLA 295
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.016
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 303 MNGTEMLGATLKVE 344
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 305
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 306 NGTEMLGATLKV 341
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 300 AMNGTEMLGATLKVE 344
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.021
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 306 NGTEMLGATLKVEIS 350
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 35.5 bits (78), Expect = 0.021
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 120 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 278
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 279 EAEDACSAMNGTEMLGATLKV 341
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 35.5 bits (78), Expect = 0.021
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 120 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 278
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 279 EAEDACSAMNGTEMLGATLKV 341
+DA MNG ++ G ++ V
Sbjct: 61 AMKDAIEGMNGQDLDGRSITV 81
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 299
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.028
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 306 NGTEMLGATLKVE 344
NG L+VE
Sbjct: 275 NGYGYDNLILRVE 287
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.028
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +3
Query: 126 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 290
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 291 ACSAMNGTEMLGATLKVEISR 353
A +N + G + ++ ++
Sbjct: 78 ALLELNAQLVDGRVVILDTTK 98
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.028
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 300 AMNGTEMLGATLKV 341
++G ++ G ++V
Sbjct: 94 -LDGQDLHGRRIRV 106
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.1 bits (77), Expect = 0.028
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 300 AMNGTEMLGATLKVEISRK 356
++GTE LG LKV + K
Sbjct: 145 NLDGTEYLGRALKVNFADK 163
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.7 bits (76), Expect = 0.037
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 123 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 278
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 279 EAEDACSAMNGTEMLGATLKVE 344
E+ D E+ G ++V+
Sbjct: 174 ESVDMVLHKTFHELNGKMVEVK 195
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.037
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 305
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 306 NGT-EMLGATLKVEI 347
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.037
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 305
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 306 NGT-EMLGATLKVEI 347
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 296
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 297 SAMNGTEMLGATLKVEISR 353
MNG + G LKV++ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.037
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 306 NGTEMLGATLKVEISR 353
+G ++ G + V++ R
Sbjct: 200 DGQKIDGRRVLVDVER 215
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.037
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 293
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 294 CSAMNGTEMLGATLKV 341
C+A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.3 bits (75), Expect = 0.049
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 300 AMNGTEMLGATLKVEI 347
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 147 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 326
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 327 ATLKV 341
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 302
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 303 MNGTEMLGATLKVE 344
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 356
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.085
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
Query: 345 ISR 353
++
Sbjct: 168 YAK 170
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.5 bits (73), Expect = 0.085
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +3
Query: 147 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 326
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 327 ATLKVEISR 353
L VEI++
Sbjct: 413 RALNVEIAK 421
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.085
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 350
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.5 bits (73), Expect = 0.085
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 321 L-GATLKVEISR 353
+ G LK+ R
Sbjct: 289 INGQRLKLTWGR 300
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 300 AMNGTEMLGATLKVEI 347
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 300 AMNGTEMLGATLKVEI 347
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 300 AMNGTEMLGATLKVEI 347
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACSA 302
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 303 MNGTEMLGATLKVE 344
++ G ++V+
Sbjct: 170 KTFHDLSGKQVEVK 183
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 272
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.1 bits (72), Expect = 0.11
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 300 AMNGTEMLGATLKV 341
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.1 bits (72), Expect = 0.11
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 300 AMNGTEMLGATLKV 341
M+G E+ G ++V
Sbjct: 95 EMDGKELNGRHIRV 108
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 305
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 306 NG 311
NG
Sbjct: 268 NG 269
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 300 AMNGTEMLGATLKVEI 347
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 311
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACS 299
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 300 AMNGTEMLGAT 332
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 266
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 296
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGTE 317
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 318 MLGATLKVEISR 353
+ G LK+ R
Sbjct: 289 VNGQRLKLTWGR 300
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 306 NGTEMLGATLK 338
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 30.3 bits (65), Expect = 0.80
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 306 NGTEMLGATLKVE 344
NG+ + G + V+
Sbjct: 82 NGSTVGGRRITVK 94
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 311
K D++ F G + V++ N P GFAF++F ++A +A NG
Sbjct: 343 KPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 299
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 300 AMNGTEMLGATLKVEI 347
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 300 AMNGT 314
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNG 311
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 272
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 306 NGTEMLGATLK 338
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 306 NGTEMLGATLK 338
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 305
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 306 NGTEMLGATLKVEISRK 356
NG LG L+V+ + K
Sbjct: 86 NGLRFLGKVLQVQRANK 102
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 31.5 bits (68), Expect = 0.34
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 299
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 300 AMNGTEMLGATLKVEISR 353
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRIQYAK 88
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 183 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
L+ F++Y + + PG AF+E+E+ ++ A A+ G
Sbjct: 170 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 31.5 bits (68), Expect = 0.34
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 299
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 300 AMNGTEMLGATLKVEISR 353
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRIQYAK 88
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 183 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
L+ F++Y + + PG AF+E+E+ ++ A A+ G
Sbjct: 171 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 302
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 302
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.1 bits (67), Expect = 0.46
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 302
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 303 MNGTEMLGATLKVEISR 353
MNG + G + V++++
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 249 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 300 AMNGTEMLGATLKVEISR 353
M+G + G + E +R
Sbjct: 116 GMDGKFLDGWVIFAEYAR 133
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 0.60
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 311
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 312 TEMLGATLKV 341
T + LKV
Sbjct: 230 TVLGFYPLKV 239
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 183 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
L + F YG + + F+EF ++++A A MNG E+ G + +E SR
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.60
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 272
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.7 bits (66), Expect = 0.60
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 299
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 300 AMNGTEMLGATLKVEISR 353
M ++++ ++
Sbjct: 71 QMQNFPFYDKPMRLQYAK 88
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGLTTHTVAAAAGRTIVT 495
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 302
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 303 MNGTEMLGATLKV 341
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.3 bits (65), Expect = 0.80
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 305
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 306 NGTEMLGATLKVEIS 350
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 0.80
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 290
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 0.80
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 123 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 287
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 288 DACSAMNG 311
A + MNG
Sbjct: 200 TAINEMNG 207
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 302
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 303 MNG 311
M+G
Sbjct: 77 MDG 79
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 204 YGKLNSVWVALNPPGFAFIEFENLQE 281
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 303 MNGTEMLGATLKVEISR 353
N +M A +VEI +
Sbjct: 170 GNMIDM--ADTQVEIKK 184
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 305
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 306 NGTEMLGATLKV 341
N ++ G ++V
Sbjct: 87 NMIKLHGKPIRV 98
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 299
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 300 AMN 308
N
Sbjct: 77 DPN 79
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 311
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 312 TEMLG 326
T MLG
Sbjct: 202 T-MLG 205
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 348 SR 353
SR
Sbjct: 254 SR 255
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNG 311
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNG 311
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 341
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 342 EISR 353
S+
Sbjct: 315 NFSK 318
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 242
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 240 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 353
P GF FI F++ +A A +++G + G + VE+++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 183 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 348 S 350
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 302
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 162 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 302
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYG--KLNSVWVA-----LNPPGFAFIEFENLQEAED 290
GT ++V L L F +G K N + V NP F FI FE + +
Sbjct: 279 GTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQS 338
Query: 291 ACSAMNGTEMLGATLKVEISRK 356
A T + A K+ + K
Sbjct: 339 VLQAAKNTPFMLADRKLRVKEK 360
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 210 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 320
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 120 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 290
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 291 ACSAMNGTEMLGATL 335
AC+ +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 290
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 290
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 290
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 311
VYV + + + +E L F G++ + +P FAF+EF + Q A A S + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 312 TEMLG 326
T M+G
Sbjct: 189 T-MIG 192
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 177 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 344
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 132 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 227
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 230
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 302
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 303 MNGTEM 320
N +M
Sbjct: 170 GNMIDM 175
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 156 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 320
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +3
Query: 138 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV------ALNPPGFAFIEFENLQEAEDACS 299
+++VG L IKK + E F ++G + +V + GF FI + + A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 300 AMNGTEMLGATLKVEI 347
+G E G L V++
Sbjct: 226 -FDGVEFHGRILTVKL 240
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +3
Query: 135 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 299
+++ V L ++ L+REF +G++ V + + G+AFI+F + +A A
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 300 AMNGTEMLGATLKVEISR 353
M+ G + ++I++
Sbjct: 100 TMDRRMYNGRMIYIDIAK 117
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 268 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 128
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKED---LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 311
++V GL E +K + L REF Y + + + + FAF F +LQ A A+NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGY-ETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 304 IALHASSASCKFSNSMKAKPGGFSATQTEF 215
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 304 IALHASSASCKFSNSMKAKPGGFSATQTEF 215
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 179 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 66
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 141 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 308
++V L K ++ F K G++ V + +N G F+EF ++ EAE+A N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 309 GTEMLGATLKVEISRK 356
G + + ++++ K
Sbjct: 189 GECLDNNKIFLDVANK 204
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 246 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 347
G F+EF ++ EA+ A MNG + + +++
Sbjct: 530 GCGFVEFASVNEAQKALQKMNGENLRSREIFLDV 563
>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 978
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 361 TGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRTIVTETDMA 510
+G EVG EV AAV + + ++V A TH + +A + + ET A
Sbjct: 630 SGALEVGKEVEAAVDADLRQRAKVHHTA---THLLQSALKKVVGQETSQA 676
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 PPGFAFIEFENLQEAEDACSAMNG-TEMLGATLKVEIS 350
P GFAF E+E + A+ A +G + TLK IS
Sbjct: 47 PKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAIS 84
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 171 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 305
+++++ E ++ KL ++ VAL+ A ++ NL+ + + SA+
Sbjct: 754 ERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSAL 798
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 211 FPYLSNSRSRSSFLIPSTRPPTYTRVP 131
FP+ ++S + S+F+ P P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 153 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 287
GL KE+ E+ D GK S W +L +E E+ +E E
Sbjct: 172 GLQHRCVKEEAEKVVDMLGKKESKWESLAHKVNTLVEDEDAKEEE 216
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 168 IKKEDLEREFDKYGKLNSVWVALNPPG 248
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
>At1g03020.1 68414.m00274 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 102
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -3
Query: 289 SSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 134
S SC S+S+K+ G+ A T + +SN L+ PT V
Sbjct: 17 SKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAV 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,591,579
Number of Sequences: 28952
Number of extensions: 164477
Number of successful extensions: 772
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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