Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1292
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...   112   5e-26
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   4.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   4.1  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    25   7.1  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score =  112 bits (269), Expect = 5e-26
 Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
 Frame = +1

Query: 85  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 252
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 253 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI- 429
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 430 -HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLG 537
            +D  ++   L  + ++D V  I++TD E ILG+GD G
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQG 167



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 576 LYTALGGIKPHQCLPITIDVGTN 644
           L T   G+ P++ LPI +DVGTN
Sbjct: 180 LMTLCAGLDPNRFLPIVLDVGTN 202


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 251 HLTSTSILWGSWTVM--STCSTVSSRITW 331
           HL  TS++ G+W ++   +   VS  +TW
Sbjct: 71  HLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = -1

Query: 495 NNGADVRLRPVLKNIVYMSLIVDRDEEAPWSAVHEAELLTGQANRRSVHNRHH 337
           ++G+ +  +P+LK      L++   +  PW  +   + L  +       NR+H
Sbjct: 414 SSGSSLAKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFSNRNH 466


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 406 PRGLFITIHDKGHVYDVLKNWPETDVRA 489
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 212 LNYASSRSIDTKIHLTSTSILWGSWTVMS 298
           LNY  S S+ TKIH   +   +GS+ + S
Sbjct: 198 LNYVMSNSVSTKIHFVGSE--YGSYLLNS 224


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 61  RSPIIRYDHVPFRYTYTSVR 2
           R+P++RYD  P RY    +R
Sbjct: 99  RNPLVRYDVSPARYPTIGIR 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,432
Number of Sequences: 5004
Number of extensions: 63452
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)