Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1292
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   2e-57
SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.)                 34   0.087
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       31   0.81 
SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                27   9.9  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   27   9.9  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 27   9.9  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     27   9.9  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  219 bits (535), Expect = 2e-57
 Identities = 99/160 (61%), Positives = 124/160 (77%)
 Frame = +1

Query: 85  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKY 264
           + G D ++   LNKG+AFT+EERQ+LGIHGLLPP V +QE Q +     + R  N L KY
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDLEKY 119

Query: 265 IYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGH 444
           I LM LL+RNE LF+R + D   E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IHDKGH
Sbjct: 120 IQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGH 179

Query: 445 VYDVLKNWPETDVRAIVVTDGERILGLGDLGACRDGHPCG 564
           + D++ NWP T+V+AIV+TDGERILGLGDLG C  G P G
Sbjct: 180 IRDIVSNWPTTEVKAIVMTDGERILGLGDLGCCGMGIPVG 219



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +3

Query: 564 GKLALYTALGGIKPHQCLPITIDVGTN 644
           GKLALYT  GGI P  CLP+ IDVGTN
Sbjct: 219 GKLALYTVCGGIDPEGCLPVMIDVGTN 245


>SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 188 ESRRKRSRLNYASSRSIDTKIHLTSTSILWGSWTVMSTCSTVSSRITWLK 337
           ++RRKRS     SSR  + K+ L  T  L+ SW  +S    V+  I W K
Sbjct: 179 QNRRKRSEFKIISSREEEKKLSLAKTCKLFQSWPKLS-LKKVAGLIRWRK 227


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -1

Query: 432 VDRDEEAPWSAVHEAELLTGQANRRSVHNRHHFSHVIRDETVEQVLITVQEPHKIDVLVK 253
           VD D E    +VH+  +   + N  SVH +       ++ +V Q  +TV E +++ V  K
Sbjct: 431 VDEDNEV---SVHQKGVTVDEDNEVSVHQKGVTVDEDKEVSVHQKGVTVDEDNEVSVHQK 487

Query: 252 WIFVSIDRE 226
            + V  D+E
Sbjct: 488 GVTVDEDKE 496



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -1

Query: 429 DRDEEAPWSAVHEAELLTGQANRRSVHNRHHFSHVIRDETVEQVLITVQEPHKIDVLVKW 250
           D D+E    +VH+  +   + N  SVH +        + +V Q  +TV E  ++ V  K 
Sbjct: 414 DDDDEDKEVSVHQKGVTVDEDNEVSVHQKGVTVDEDNEVSVHQKGVTVDEDKEVSVHQKG 473

Query: 249 IFVSIDRE 226
           + V  D E
Sbjct: 474 VTVDEDNE 481


>SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 460 KNWPETDVRAIVVTDGERILGLGDLGACRDGH-PCGANSRSTPRSEASSRISVCPSLS 630
           + + + DV +  + +GE  L +G   +    + P G+ S+ +P  +AS+  +  PSLS
Sbjct: 58  RKFNQIDVLSNDIPNGEHSLSIGRRDSYSSSYSPAGSYSQMSPSPKASTSQAASPSLS 115


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 121 NKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIYLM 276
           N G+   + +R+L      + PR   QEE +E+ K     Y + + +Y+ L+
Sbjct: 161 NSGVLVLLSQRRLKDYRNRIKPRRGFQEEVIEVLKAETSSYFD-VQRYVILL 211


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 134 LLPSKSVSSWAYTGCYHHESRRKRSRLNYASSRSIDTKIHLTSTSILWG 280
           L P +   SW +     H++R K    NY   + +DT + L    ++WG
Sbjct: 162 LRPKEDPDSW-FNAFVLHQNRAKHGHTNYIPEKFLDTFLDL----VVWG 205


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 415 LFITIHDKGHVYDVLKNWPE 474
           L IT H+ GH+Y  LK W +
Sbjct: 364 LIITHHEMGHIYYFLKYWDQ 383


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 484 RAIVVTDGERILGLGD-LGACRDGHPCGANSRSTPRSEASSRISVCPSLSTWV 639
           R I    G+R + +   L A  DG+P G   R       S +  VCP  +TWV
Sbjct: 180 RGITRCQGDRDVFIRKGLWAGMDGYPGGECQRGYSVVLGSDQCKVCPQDNTWV 232


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = +1

Query: 571 SRSTPRSEASSRISVCPSLST 633
           SRSTPRS A SRI   PS ST
Sbjct: 435 SRSTPRSRAGSRIRT-PSTST 454


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 637 PTSIVMGRH*CGLMPPSAV*SASLPHRDAHPGMRPSRPDPEYVLRRLQQWRGRPSPASS* 458
           P+ I+MGR  C  +P       S+P       +RP + D E +L+R Q++R   S   + 
Sbjct: 797 PSEILMGRKLCNKLP-------SVPEN-----LRPRKIDQEQLLKREQEYREHYSSNYNS 844

Query: 457 EHR 449
            HR
Sbjct: 845 RHR 847


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,697
Number of Sequences: 59808
Number of extensions: 547240
Number of successful extensions: 1604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)