Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1292
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 196 1e-50
AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical ... 30 1.2
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 29 2.8
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 2.8
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 5.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 5.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 5.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 5.0
Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-li... 27 8.7
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 196 bits (478), Expect = 1e-50
Identities = 93/160 (58%), Positives = 114/160 (71%), Gaps = 2/160 (1%)
Frame = +1
Query: 91 GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIY 270
G+D LK PGLNKGMAF++ ERQ LG+HGLLPP T+E+Q + + + L KYI
Sbjct: 51 GIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYIQ 110
Query: 271 LMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK--GH 444
L L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D
Sbjct: 111 LDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISK 170
Query: 445 VYDVLKNWPETDVRAIVVTDGERILGLGDLGACRDGHPCG 564
++ +L NWP +VRAIV+TDGERILGLGDLG G P G
Sbjct: 171 IHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVG 210
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 564 GKLALYTALGGIKPHQCLPITIDVGTN 644
GKLALY AL GI+P CLP+ +DVGT+
Sbjct: 210 GKLALYVALAGIRPEWCLPVILDVGTD 236
>AC024810-5|AAF60763.1| 507|Caenorhabditis elegans Hypothetical
protein Y54E10A.6 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 405 SAVHEAELLTGQANRRSVHNRHHFSHVIRDETVEQVLITVQE 280
S + +AEL ++ R +V H + H+++DE + L+ Q+
Sbjct: 381 SLLRDAELARKRSKRSTVDPLHKYLHIVKDENILACLVDSQQ 422
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 263 TSILWGSWTVMSTCSTVS 316
TS +WG W STC TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 263 TSILWGSWTVMSTCSTVS 316
TS +WG W STC TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 263 TSILWGSWTVMSTCSTVS 316
TS +WG W STC TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 263 TSILWGSWTVMSTCSTVS 316
TS +WG W STC TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 178 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 300
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 178 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 300
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 562 HRDAHPGMRPSRPDPEYVLRRLQQWRGRPSPA 467
H+ HPG + ++ R +QWRG P P+
Sbjct: 51 HQPRHPGPPAHQDWGDWSANRDEQWRGPPGPS 82
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 403 GGTRGRTSDRPGQPSECTQSASFQPRYPRRNGRTGA 296
GG RG P + SE + + +PR PRR+ TG+
Sbjct: 380 GGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGS 415
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 403 GGTRGRTSDRPGQPSECTQSASFQPRYPRRNGRTGA 296
GG RG P + SE + + +PR PRR+ TG+
Sbjct: 401 GGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGS 436
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 403 GGTRGRTSDRPGQPSECTQSASFQPRYPRRNGRTGA 296
GG RG P + SE + + +PR PRR+ TG+
Sbjct: 386 GGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGS 421
>Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical
protein F17B5.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 458 RTSYTCPLSWIVMKRPLGR 402
R + TCP WI +RP GR
Sbjct: 66 RPTRTCPRDWITFERPQGR 84
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 173 PCMPKS*RSSMVKAMPLLRPGCLRWSRPERPLVGCPSPEPHNPIRS 36
P P+ R+ ++ P RP S RP PSPEP NP R+
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRT 186
>Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical
protein K09B11.1 protein.
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +1
Query: 187 RVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTV 366
R + ++ EL L+ R++N L Y Y L L Y+F+++ E + +V
Sbjct: 228 RERLRQSLTELRTLARFRHDNILPIYAY--SLEGSEPCLVYQFMSNGSLEDRLLCRKGSV 285
Query: 367 GLA-CQKFGLVYRRPRGLFITIHDKGHVYDVLKNWPETDVR-AIVVTDGERILGLGDLGA 540
L Q+ + RGL +H G + D++ A ++ D +GD G
Sbjct: 286 PLTWIQRKEISIGAGRGLGF-LHSFGKTPII-----HGDIKTANILLDKHMEPKIGDFGL 339
Query: 541 CRDGH 555
CRDGH
Sbjct: 340 CRDGH 344
>AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-like
kinase 1 protein.
Length = 485
Score = 27.5 bits (58), Expect = 8.7
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +1
Query: 187 RVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTV 366
R + ++ EL L+ R++N L Y Y L L Y+F+++ E + +V
Sbjct: 228 RERLRQSLTELRTLARFRHDNILPIYAY--SLEGSEPCLVYQFMSNGSLEDRLLCRKGSV 285
Query: 367 GLA-CQKFGLVYRRPRGLFITIHDKGHVYDVLKNWPETDVR-AIVVTDGERILGLGDLGA 540
L Q+ + RGL +H G + D++ A ++ D +GD G
Sbjct: 286 PLTWIQRKEISIGAGRGLGF-LHSFGKTPII-----HGDIKTANILLDKHMEPKIGDFGL 339
Query: 541 CRDGH 555
CRDGH
Sbjct: 340 CRDGH 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,692
Number of Sequences: 27780
Number of extensions: 388184
Number of successful extensions: 1166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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