Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1292
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 83  PLVGCPSPEPHNPIR-----SRSISLYVH 12
           PL+   +PE H+PIR     SRS+ L  H
Sbjct: 71  PLLRFENPETHHPIRHGRRQSRSMDLNAH 99


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 409 LVGGTRGRTSDRPGQPSECTQSASFQPRYPRRNG 308
           + G   G  + RPGQPS   Q A F+     +NG
Sbjct: 70  MTGDAYGGLNIRPGQPSR--QHAGFEFGKEYKNG 101


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 116 PGCLRWSRPERPLV 75
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,504
Number of Sequences: 438
Number of extensions: 5262
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)