Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1290
(688 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5612C Cluster: PREDICTED: similar to Probable D... 202 5e-51
UniRef50_UPI00015B58CE Cluster: PREDICTED: similar to DNA mismat... 194 1e-48
UniRef50_UPI0000DB6F1F Cluster: PREDICTED: similar to Probable D... 188 8e-47
UniRef50_Q9VUM0 Cluster: Probable DNA mismatch repair protein MS... 181 1e-44
UniRef50_P52701 Cluster: DNA mismatch repair protein MSH6; n=29;... 175 6e-43
UniRef50_UPI0000E46CD1 Cluster: PREDICTED: similar to mismatch r... 156 4e-37
UniRef50_Q9N3T8 Cluster: Msh (Muts homolog) family protein 6; n=... 155 1e-36
UniRef50_Q23K54 Cluster: MutS domain III family protein; n=1; Te... 124 2e-27
UniRef50_O04716 Cluster: DNA mismatch repair protein MSH6-1; n=8... 124 2e-27
UniRef50_A4RYZ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 121 2e-26
UniRef50_A7Q0L8 Cluster: Chromosome chr7 scaffold_42, whole geno... 120 4e-26
UniRef50_Q8RVT1 Cluster: MutS homolog 7; n=6; Magnoliophyta|Rep:... 109 5e-23
UniRef50_Q9SMV7 Cluster: DNA mismatch repair protein MSH6-2; n=2... 106 4e-22
UniRef50_Q9XGD0 Cluster: MUS2 protein; n=2; Zea mays|Rep: MUS2 p... 101 2e-20
UniRef50_A5BEQ5 Cluster: Putative uncharacterized protein; n=1; ... 100 7e-20
UniRef50_A7TSN2 Cluster: Putative uncharacterized protein; n=1; ... 98 2e-19
UniRef50_Q55GU9 Cluster: DNA mismatch repair protein; n=1; Dicty... 95 2e-18
UniRef50_Q8I447 Cluster: DNA repair protein, putative; n=3; Plas... 93 6e-18
UniRef50_Q1DLI8 Cluster: Putative uncharacterized protein; n=1; ... 92 1e-17
UniRef50_O74502 Cluster: DNA mismatch repair protein msh6; n=1; ... 91 2e-17
UniRef50_A3GHU7 Cluster: Mismatch repair ATPase MSH6; n=5; Sacch... 91 2e-17
UniRef50_A1CXE2 Cluster: DNA mismatch repair protein Msh6, putat... 91 2e-17
UniRef50_A5KAY3 Cluster: DNA repair protein, putative; n=2; Plas... 90 5e-17
UniRef50_Q03834 Cluster: MutS protein homolog 6; n=6; Fungi/Meta... 90 5e-17
UniRef50_Q23AD6 Cluster: MutS domain III family protein; n=2; Te... 89 7e-17
UniRef50_A2EA54 Cluster: MutS domain III family protein; n=1; Tr... 88 2e-16
UniRef50_Q4UGD4 Cluster: DNA mismatch repair protein, MutS famil... 87 4e-16
UniRef50_A0BIQ0 Cluster: Chromosome undetermined scaffold_11, wh... 86 7e-16
UniRef50_UPI00004983EC Cluster: mutS family protein; n=1; Entamo... 85 1e-15
UniRef50_A7T736 Cluster: Predicted protein; n=1; Nematostella ve... 85 2e-15
UniRef50_A7AWU6 Cluster: DNA repair protein, putative; n=1; Babe... 83 5e-15
UniRef50_A3FQP9 Cluster: DNA repair protein; n=2; Cryptosporidiu... 83 5e-15
UniRef50_Q8SR47 Cluster: DNA MISMATCH REPAIR PROTEIN OF THE MUTS... 81 3e-14
UniRef50_Q6C0A2 Cluster: Yarrowia lipolytica chromosome F of str... 79 1e-13
UniRef50_Q5K9A8 Cluster: Mismatch repair-related protein, putati... 77 4e-13
UniRef50_Q4Q1M8 Cluster: Mismatch repair protein MSH8, putative;... 72 1e-11
UniRef50_Q4E4A8 Cluster: Mismatch repair protein MSH6, putative;... 65 1e-09
UniRef50_A0DMV3 Cluster: Chromosome undetermined scaffold_57, wh... 60 4e-08
UniRef50_Q97I19 Cluster: DNA mismatch repair protein mutS; n=10;... 60 4e-08
UniRef50_A0MNQ7 Cluster: Putative mismatch repair protein; n=1; ... 60 5e-08
UniRef50_Q2FU04 Cluster: DNA mismatch repair protein MutS; n=4; ... 53 6e-06
UniRef50_P61668 Cluster: DNA mismatch repair protein mutS; n=89;... 52 2e-05
UniRef50_O66652 Cluster: DNA mismatch repair protein mutS; n=2; ... 51 2e-05
UniRef50_A4XL47 Cluster: DNA mismatch repair protein MutS; n=1; ... 51 3e-05
UniRef50_P0C1S1 Cluster: DNA mismatch repair protein mutS; n=25;... 50 4e-05
UniRef50_A6NSZ4 Cluster: Putative uncharacterized protein; n=1; ... 50 7e-05
UniRef50_Q8XL87 Cluster: DNA mismatch repair protein mutS; n=15;... 49 9e-05
UniRef50_Q3ACA5 Cluster: DNA mismatch repair protein mutS; n=1; ... 49 1e-04
UniRef50_Q5FLX5 Cluster: DNA mismatch repair protein mutS; n=5; ... 48 2e-04
UniRef50_Q9Z6W5 Cluster: DNA mismatch repair protein mutS; n=15;... 48 2e-04
UniRef50_Q2LUL3 Cluster: DNA mismatch repair protein; n=6; Bacte... 47 4e-04
UniRef50_Q5C367 Cluster: SJCHGC08145 protein; n=1; Schistosoma j... 47 4e-04
UniRef50_Q9ZDM9 Cluster: DNA mismatch repair protein mutS; n=11;... 47 4e-04
UniRef50_Q0EUR1 Cluster: DNA mismatch repair protein MutS; n=4; ... 47 5e-04
UniRef50_Q3ZYA0 Cluster: DNA mismatch repair protein mutS; n=3; ... 47 5e-04
UniRef50_Q6MBV4 Cluster: DNA mismatch repair protein mutS; n=1; ... 46 7e-04
UniRef50_A4RYB5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 46 9e-04
UniRef50_Q1IN52 Cluster: DNA mismatch repair protein MutS; n=2; ... 46 0.001
UniRef50_Q0AYB5 Cluster: DNA mismatch repair protein; n=1; Syntr... 46 0.001
UniRef50_A4J5Q6 Cluster: DNA mismatch repair protein MutS; n=4; ... 46 0.001
UniRef50_Q8RFK2 Cluster: DNA mismatch repair protein mutS; n=4; ... 46 0.001
UniRef50_P56883 Cluster: DNA mismatch repair protein mutS; n=34;... 45 0.002
UniRef50_Q11B27 Cluster: DNA mismatch repair protein MutS; n=41;... 45 0.002
UniRef50_Q5FPT5 Cluster: DNA mismatch repair protein MutS; n=4; ... 44 0.003
UniRef50_A6C3E3 Cluster: DNA mismatch repair protein; n=2; Planc... 44 0.003
UniRef50_Q194I0 Cluster: DNA mismatch repair protein MutS; n=2; ... 43 0.008
UniRef50_Q67NK1 Cluster: DNA mismatch repair protein mutS; n=4; ... 43 0.008
UniRef50_Q7MXR7 Cluster: DNA mismatch repair protein mutS; n=25;... 43 0.008
UniRef50_Q7UP05 Cluster: DNA mismatch repair protein mutS; n=2; ... 42 0.011
UniRef50_Q6MLQ3 Cluster: DNA mismatch repair protein; n=1; Bdell... 42 0.019
UniRef50_Q9PCR2 Cluster: DNA mismatch repair protein mutS; n=287... 42 0.019
UniRef50_P74926 Cluster: DNA mismatch repair protein mutS; n=5; ... 42 0.019
UniRef50_Q5FHE8 Cluster: DNA mismatch repair protein mutS; n=9; ... 42 0.019
UniRef50_A1I7K0 Cluster: DNA mismatch repair protein MutS precur... 41 0.025
UniRef50_Q4PBU4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.033
UniRef50_O83348 Cluster: DNA mismatch repair protein mutS; n=2; ... 41 0.033
UniRef50_P73769 Cluster: DNA mismatch repair protein mutS; n=21;... 41 0.033
UniRef50_A7I7M3 Cluster: DNA mismatch repair protein MutS; n=1; ... 40 0.043
UniRef50_P57972 Cluster: DNA mismatch repair protein mutS; n=8; ... 40 0.043
UniRef50_Q8TTB4 Cluster: DNA mismatch repair protein mutS; n=3; ... 40 0.043
UniRef50_Q8F496 Cluster: DNA mismatch repair protein mutS; n=4; ... 40 0.043
UniRef50_Q7NLT8 Cluster: DNA mismatch repair protein mutS; n=13;... 40 0.043
UniRef50_Q5L0E5 Cluster: DNA mismatch repair protein mutS; n=63;... 40 0.043
UniRef50_Q8KCC0 Cluster: DNA mismatch repair protein mutS; n=9; ... 40 0.075
UniRef50_P61666 Cluster: DNA mismatch repair protein mutS; n=4; ... 39 0.099
UniRef50_Q0EZG8 Cluster: DNA mismatch repair protein; n=1; Marip... 39 0.13
UniRef50_A0L7L5 Cluster: DNA mismatch repair protein MutS; n=1; ... 39 0.13
UniRef50_O51737 Cluster: DNA mismatch repair protein mutS; n=3; ... 38 0.23
UniRef50_Q6FC54 Cluster: DNA mismatch repair protein mutS; n=13;... 38 0.23
UniRef50_Q5NL79 Cluster: DNA mismatch repair protein mutS; n=11;... 38 0.30
UniRef50_UPI00006CBD0E Cluster: MutS domain III family protein; ... 37 0.40
UniRef50_Q2S254 Cluster: DNA mismatch repair protein MutS; n=1; ... 37 0.40
UniRef50_A7M3N4 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_Q5NEV8 Cluster: DNA mismatch repair protein mutS; n=20;... 37 0.40
UniRef50_Q6AQ04 Cluster: DNA mismatch repair protein mutS; n=7; ... 37 0.40
UniRef50_A6G9B7 Cluster: DNA mismatch repair protein; n=1; Plesi... 37 0.53
UniRef50_UPI0000ECB4A8 Cluster: Nucleolar phosphoprotein p130 (N... 36 0.70
UniRef50_A7PKP7 Cluster: Chromosome chr7 scaffold_20, whole geno... 36 1.2
UniRef50_Q1ZXG7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q62J26 Cluster: DNA mismatch repair protein mutS; n=169... 36 1.2
UniRef50_Q64BA6 Cluster: Putative uncharacterized protein; n=2; ... 35 1.6
UniRef50_Q8RBF4 Cluster: Predicted xylanase/chitin deacetylase; ... 35 2.1
UniRef50_Q64S96 Cluster: Putative DNA primase; n=1; Bacteroides ... 35 2.1
UniRef50_Q2GE72 Cluster: DNA mismatch repair protein MutS; n=1; ... 35 2.1
UniRef50_A7BWV9 Cluster: DNA mismatch repair protein MutS; n=1; ... 35 2.1
UniRef50_P61673 Cluster: DNA mismatch repair protein mutS; n=9; ... 35 2.1
UniRef50_Q7V9M5 Cluster: DNA mismatch repair protein mutS; n=6; ... 35 2.1
UniRef50_A4V7C3 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q383W1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_A5DEV6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_UPI000023F365 Cluster: predicted protein; n=1; Gibberel... 34 3.7
UniRef50_Q6EME6 Cluster: Hnh endonuclease; n=4; Enterobacteriace... 34 3.7
UniRef50_A6GR75 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_Q22N96 Cluster: TBC domain containing protein; n=1; Tet... 34 3.7
UniRef50_UPI000155553E Cluster: PREDICTED: hypothetical protein,... 33 4.9
UniRef50_Q7S2D5 Cluster: Putative uncharacterized protein NCU059... 33 4.9
UniRef50_Q8K9D2 Cluster: DNA mismatch repair protein mutS; n=3; ... 33 4.9
UniRef50_A0LG76 Cluster: DNA mismatch repair protein MutS precur... 33 6.5
UniRef50_O18529 Cluster: Rap8; n=1; Rhynchosciara americana|Rep:... 33 6.5
UniRef50_A7S9X1 Cluster: Predicted protein; n=1; Nematostella ve... 33 6.5
UniRef50_A0RXX2 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_A0B976 Cluster: DNA mismatch repair protein MutS; n=1; ... 33 6.5
UniRef50_Q56239 Cluster: DNA mismatch repair protein mutS; n=5; ... 33 6.5
UniRef50_A6VYS0 Cluster: CRISPR-associated protein, Csy4 family;... 33 8.6
UniRef50_Q552L1 Cluster: DNA mismatch repair protein; n=1; Dicty... 33 8.6
UniRef50_Q24C11 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_Q6CSE2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 33 8.6
UniRef50_Q6CN28 Cluster: KNR4/SMI1 homolog; n=1; Kluyveromyces l... 33 8.6
>UniRef50_UPI0000D5612C Cluster: PREDICTED: similar to Probable DNA
mismatch repair protein MSH6; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Probable DNA
mismatch repair protein MSH6 - Tribolium castaneum
Length = 1079
Score = 202 bits (494), Expect = 5e-51
Identities = 84/118 (71%), Positives = 103/118 (87%)
Frame = +3
Query: 189 NWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDC 368
NW+H +LD+L+PDKIRD KR+PD PDY+PRTLY+P FL+ QTPA +QWW++KST+ D
Sbjct: 131 NWLHNRLDFLQPDKIRDVNKRRPDDPDYDPRTLYIPQSFLEKQTPAMRQWWVLKSTHMDS 190
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
VLFFKVGKFYELYHMDA VGV +LGFSYMKG+FAHSGFPESAY +MA+ L+ KG+K+A
Sbjct: 191 VLFFKVGKFYELYHMDAVVGVTQLGFSYMKGEFAHSGFPESAYHKMANALIEKGFKVA 248
Score = 62.5 bits (145), Expect = 9e-09
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +2
Query: 542 FAVAEQAHNDSSS-YGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
+A+AE+ S +G+CFIDTSIG+F L +F+DDKH S+LL L+ YPP
Sbjct: 307 YAIAEKDVTGSQRRFGICFIDTSIGVFKLAEFDDDKHCSKLLVCLSEYPP 356
>UniRef50_UPI00015B58CE Cluster: PREDICTED: similar to DNA mismatch
repair protein muts; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to DNA mismatch repair protein muts -
Nasonia vitripennis
Length = 1151
Score = 194 bits (474), Expect = 1e-48
Identities = 89/167 (53%), Positives = 123/167 (73%), Gaps = 10/167 (5%)
Frame = +3
Query: 72 EPNQTPKSNK---NTKTTA---GSKSKTILPEENPKSQEE---ESSDG-NWVHCKLDWLK 221
+ ++TPK + N KT + G K+I +++ QE+ ++SD +W H K ++L+
Sbjct: 139 DEDETPKKKQKMSNIKTPSRRGGGAKKSIAKKDSGTGQEQPTGKASDTQDWPHLKYEFLQ 198
Query: 222 PDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYE 401
DKIRD KR+ PDY+PRT+YVPPDFL QTPA +QWW++KS ++DCVLFFKVGKFYE
Sbjct: 199 KDKIRDNKKRRSTDPDYDPRTVYVPPDFLDKQTPAMRQWWVLKSDHYDCVLFFKVGKFYE 258
Query: 402 LYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
LYHMDA GVNEL ++M+G+FAHSGFPE AYGR +++L+ +GYK+A
Sbjct: 259 LYHMDAVTGVNELSLTFMRGEFAHSGFPEIAYGRFSASLIERGYKVA 305
Score = 70.5 bits (165), Expect = 4e-11
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 554 EQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
++ + + SSYGVCFIDT+IG F+LGQF+DD+ +SRLLT LAHYPP
Sbjct: 370 QERNQNISSYGVCFIDTTIGDFNLGQFQDDRCNSRLLTLLAHYPP 414
>UniRef50_UPI0000DB6F1F Cluster: PREDICTED: similar to Probable DNA
mismatch repair protein MSH6; n=1; Apis mellifera|Rep:
PREDICTED: similar to Probable DNA mismatch repair
protein MSH6 - Apis mellifera
Length = 1120
Score = 188 bits (459), Expect = 8e-47
Identities = 85/170 (50%), Positives = 114/170 (67%), Gaps = 2/170 (1%)
Frame = +3
Query: 90 KSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPD 269
K K K K ++ +SQ + +W H K D+L+P+KIRD K+ P+ D
Sbjct: 146 KPQKGAKKNFKEDKKESKVQQQNQSQGSNNVIDSWPHLKYDFLQPNKIRDINKKSPNDSD 205
Query: 270 YNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS 449
Y+P+TLYVP DFL QTPA +QWW +KS +FDCVLFFK+GKFYELYHMDA +GVNEL +
Sbjct: 206 YDPKTLYVPLDFLNQQTPAMRQWWELKSKHFDCVLFFKLGKFYELYHMDAVIGVNELHLT 265
Query: 450 YMKGDFAHSGFPESAYGRMASTLVSKGYKIA--SRWLNRHIMIQAVMEFV 593
YM+G+FAHSGFPE YGR +++L+ +GYK+A + N +M Q V +
Sbjct: 266 YMRGEFAHSGFPEIGYGRFSASLIERGYKVARVEQTENPDMMAQRVSNMI 315
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 575 SSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
S YGVCF+DT+IG F+LGQFEDD+ +SRLLT LAHYPP
Sbjct: 368 SHYGVCFLDTTIGDFYLGQFEDDRCNSRLLTLLAHYPP 405
>UniRef50_Q9VUM0 Cluster: Probable DNA mismatch repair protein MSH6;
n=5; Diptera|Rep: Probable DNA mismatch repair protein
MSH6 - Drosophila melanogaster (Fruit fly)
Length = 1190
Score = 181 bits (441), Expect = 1e-44
Identities = 74/117 (63%), Positives = 97/117 (82%)
Frame = +3
Query: 192 WVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCV 371
W H KL++L+PDKI+D R+PDHPDY+ TL+VP FL +P +QWW++KS N+DCV
Sbjct: 220 WPHQKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCV 279
Query: 372 LFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
LFFKVGKFYELYHMDA VGVNELGF+YM+G+FAHSGFPE ++ +M++ LV +G+K+A
Sbjct: 280 LFFKVGKFYELYHMDADVGVNELGFTYMRGEFAHSGFPEISFDKMSTILVDRGFKVA 336
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +2
Query: 545 AVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
A+ E+ S YGVCFIDTSIG FHLG+FEDDK+ SRLLT ++H+ P
Sbjct: 395 AIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMP 442
>UniRef50_P52701 Cluster: DNA mismatch repair protein MSH6; n=29;
Euteleostomi|Rep: DNA mismatch repair protein MSH6 -
Homo sapiens (Human)
Length = 1360
Score = 175 bits (427), Expect = 6e-43
Identities = 85/170 (50%), Positives = 113/170 (66%), Gaps = 11/170 (6%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTIL----PEENPKSQEEESSDGN-------WVHCKLD 212
K +TP + K T+ S++K L +N +SQ S G+ W H L+
Sbjct: 313 KSSRKETPSATKQA-TSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHETLE 371
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGK 392
WLK +K RD +R+PDHPD++ TLYVP DFL S TP ++WW +KS NFD V+ +KVGK
Sbjct: 372 WLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGK 431
Query: 393 FYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
FYELYHMDA +GV+ELG +MKG++AHSGFPE A+GR + +LV KGYK+A
Sbjct: 432 FYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVA 481
Score = 64.9 bits (151), Expect = 2e-09
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +2
Query: 554 EQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
E + + +YGVCF+DTS+G F +GQF DD+H SR T +AHYPP
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPP 591
>UniRef50_UPI0000E46CD1 Cluster: PREDICTED: similar to mismatch
repair protein Msh6, partial; n=3; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mismatch repair
protein Msh6, partial - Strongylocentrotus purpuratus
Length = 568
Score = 156 bits (379), Expect = 4e-37
Identities = 73/153 (47%), Positives = 97/153 (63%)
Frame = +3
Query: 84 TPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDH 263
TP + TK+ S ++ P S +S + + H + +WLKP KI+D R
Sbjct: 155 TPSVSSTTKSRL-SAFQSPAPSSPSPSPAADSEETRFPHQRQEWLKPGKIKDIKGRTEQD 213
Query: 264 PDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELG 443
P+Y+ TL+VP F+ TPA +QWW MKS ++ VLFFK+GKFYELYHMDA V V ELG
Sbjct: 214 PEYDSSTLFVPKSFMDKTTPAMRQWWEMKSKYYNAVLFFKMGKFYELYHMDAEVAVKELG 273
Query: 444 FSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+MKG+ AHSGFPE A+ R + TL+ KGY+IA
Sbjct: 274 LIFMKGENAHSGFPEIAFSRYSETLIQKGYRIA 306
Score = 67.3 bits (157), Expect = 3e-10
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Frame = +2
Query: 497 RTYGF-DSSIERLQNSFAVA------EQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSS 655
RT+ F D Q+S+ +A E + S YGVC ++TSIG F++GQF+DD+HSS
Sbjct: 348 RTFSFIDGDTCEAQSSYLLAVTERPCEGSSGGESVYGVCIVETSIGKFYIGQFQDDRHSS 407
Query: 656 RLLTTLAHYPP 688
R T +AHYPP
Sbjct: 408 RFRTLIAHYPP 418
>UniRef50_Q9N3T8 Cluster: Msh (Muts homolog) family protein 6; n=2;
Caenorhabditis|Rep: Msh (Muts homolog) family protein 6
- Caenorhabditis elegans
Length = 1186
Score = 155 bits (376), Expect = 1e-36
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = +3
Query: 198 HCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLF 377
H D+LKPDKIRD KR P+Y+P+TL+VPPDF + QTP H+QWW MKS +FD +L
Sbjct: 211 HESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTMKSQHFDTILL 270
Query: 378 FKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
FKVGKFYE YHMDA V L ++M+G +AH+GFPE A + A L++ GYK+A
Sbjct: 271 FKVGKFYETYHMDAVEVVRALNIAFMRGSYAHAGFPEHAASKFADQLMNHGYKVA 325
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 515 SSIERLQNSFAVAEQAHNDS---SSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAH 679
S+++ ++ HN SSYGVC IDT+ +GQFEDD + S+L T LA+
Sbjct: 378 STLDPTAKHLLAIKEFHNPETGKSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLAN 435
>UniRef50_Q23K54 Cluster: MutS domain III family protein; n=1;
Tetrahymena thermophila SB210|Rep: MutS domain III
family protein - Tetrahymena thermophila SB210
Length = 1232
Score = 124 bits (299), Expect = 2e-27
Identities = 57/107 (53%), Positives = 76/107 (71%)
Frame = +3
Query: 222 PDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYE 401
P+ D+ KRK P+Y+P TLYVPP+ LK TP +Q+W +KSTNFD +LFFK+GKFYE
Sbjct: 234 PENAMDSKKRKRTDPNYDPTTLYVPPESLKQFTPVMRQYWEIKSTNFDKILFFKLGKFYE 293
Query: 402 LYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
L++ DA + EL ++M G H+GFPE A +MAS L+S GYK+A
Sbjct: 294 LFYEDALITHKELDLNWM-GKKMHTGFPEKALDKMASKLISLGYKVA 339
>UniRef50_O04716 Cluster: DNA mismatch repair protein MSH6-1; n=8;
Magnoliophyta|Rep: DNA mismatch repair protein MSH6-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1324
Score = 124 bits (299), Expect = 2e-27
Identities = 56/112 (50%), Positives = 74/112 (66%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
K +L D+ RDA +R+P +Y+PRTLY+PPDF+K T +QWW K+ + D V+FFK
Sbjct: 343 KFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFK 401
Query: 384 VGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
+GKFYEL+ MDA VG EL YMKG+ H GFPE + LV KGY++
Sbjct: 402 MGKFYELFEMDAHVGAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRV 453
>UniRef50_A4RYZ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1113
Score = 121 bits (291), Expect = 2e-26
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 9/121 (7%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQ---------TPAHQQWWIMKST 356
K +++P+KI+DA R+PD PDY+P TL +P F K + +P QWW K+
Sbjct: 119 KFPFMQPEKIKDADGRRPDDPDYDPSTLLLPSTFPKMRDASGVQWTVSPGQAQWWKFKAA 178
Query: 357 NFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYK 536
NFD VL FK+GKFYE++ MDA +GV +LG YM+G+ H+GFPE Y A L G++
Sbjct: 179 NFDSVLLFKMGKFYEMFEMDAHIGVRDLGLMYMRGEQPHAGFPEKNYAMHAEQLARNGHR 238
Query: 537 I 539
+
Sbjct: 239 V 239
>UniRef50_A7Q0L8 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1245
Score = 120 bits (288), Expect = 4e-26
Identities = 54/112 (48%), Positives = 73/112 (65%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
KL +L ++ +DA +R P +Y+PRTLY+PP+FLK+ T +QWW KS + D V+FFK
Sbjct: 268 KLPFLGGER-KDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKSRHMDKVIFFK 326
Query: 384 VGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
+GKFYEL+ MDA +G EL YMKG H GFPE + L KGY++
Sbjct: 327 MGKFYELFEMDAHIGAKELDLQYMKGGQPHCGFPEKNFSINVEKLARKGYRV 378
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 545 AVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
AV E + S+GVC +D + LGQF DD S L L+ P
Sbjct: 434 AVTESCQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRP 481
>UniRef50_Q8RVT1 Cluster: MutS homolog 7; n=6; Magnoliophyta|Rep:
MutS homolog 7 - Triticum aestivum (Wheat)
Length = 1160
Score = 109 bits (263), Expect = 5e-23
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAM 245
+ + +Q +N + GS K +P + K +WL P IRDA
Sbjct: 256 RVQQDQRMTANNSQSPLWGSNKKVKSAHCSPPGKMVHDEMAESARSKFEWLNPLNIRDAN 315
Query: 246 KRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAV 425
KR+PD P Y+ RTL++PPD L+ + + +Q+W +K D +LFFKVGKFYELY +DA +
Sbjct: 316 KRRPDDPLYDKRTLFIPPDALRKMSTSQKQYWSIKCKYMDVLLFFKVGKFYELYEVDAEI 375
Query: 426 GVNELGFSYM---KGDFAHSGFPESAYGRMASTLVSKGYKI 539
G EL + G G ES L+++GYK+
Sbjct: 376 GQKELDWKMTISGVGKCRQVGISESGIDDAVEKLLARGYKV 416
>UniRef50_Q9SMV7 Cluster: DNA mismatch repair protein MSH6-2; n=2;
core eudicotyledons|Rep: DNA mismatch repair protein
MSH6-2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1109
Score = 106 bits (255), Expect = 4e-22
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
K +WL+ +IRDA +R+PD P Y+ +TL++PPD K + + +Q+W +KS D VLFFK
Sbjct: 230 KFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFK 289
Query: 384 VGKFYELYHMDAAVGVNELGFSYMK---GDFAHSGFPESAYGRMASTLVSKGYKI 539
VGKFYELY +DA +G EL + G G ES L+++GYK+
Sbjct: 290 VGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKV 344
>UniRef50_Q9XGD0 Cluster: MUS2 protein; n=2; Zea mays|Rep: MUS2
protein - Zea mays (Maize)
Length = 1184
Score = 101 bits (241), Expect = 2e-20
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
K +WL IRDA KR+P+ P Y+ TL++PPD L+ + + +Q+W +K D VLFFK
Sbjct: 328 KFEWLNSFAIRDANKRRPNDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFK 387
Query: 384 VGKFYELYHMDAAVGVNELGFSYM---KGDFAHSGFPESAYGRMASTLVSKGYKI 539
VGKFYELY +DA +G EL + G G ES L+++GYK+
Sbjct: 388 VGKFYELYELDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLIARGYKV 442
>UniRef50_A5BEQ5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1349
Score = 99.5 bits (237), Expect = 7e-20
Identities = 48/112 (42%), Positives = 69/112 (61%)
Frame = +3
Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
KL +L ++ +DA +R P +Y+PRTLY+PP+FLK+ T +QWW KS + D V+FFK
Sbjct: 306 KLPFLGGER-KDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKSRHMDKVIFFK 364
Query: 384 VGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
+GKFYEL+ MDA +G EL YMK P S+ + +GY++
Sbjct: 365 MGKFYELFEMDAHIGAKELDLQYMKSTSISFMNPFSSRILTGAPWTVQGYRV 416
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 545 AVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
AV E + S+GVC +D + LGQF DD S L L+ P
Sbjct: 472 AVTESCQFEERSFGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRP 519
>UniRef50_A7TSN2 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1251
Score = 97.9 bits (233), Expect = 2e-19
Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Frame = +3
Query: 78 NQTPKS-NKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRK 254
+QT KS NK ++ SK T P + + + S+ + WL IRDA KR
Sbjct: 241 SQTTKSVNKILNSSVPSKPSTPRPVKKINNSSKHSNFNKENEERYQWLVD--IRDAQKRP 298
Query: 255 PDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVN 434
P+Y+PRTLY+P T +Q+W +KS +DCV+FFK GKF+ELY DA +G +
Sbjct: 299 ISDPEYDPRTLYIPSSAWNKFTAFEKQYWEIKSKMWDCVVFFKKGKFFELYEKDAMLGNS 358
Query: 435 ELGFSYMKGDFAH---SGFPESAYGRMASTLVSKGYKIA 542
G A+ +G PE ++ +S + GYK+A
Sbjct: 359 LFDLKIAGGGRANMQLAGIPEMSFDYWSSQFIQYGYKVA 397
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 581 YGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
+GV FIDT+ G + +FEDDK S+ T ++ P
Sbjct: 475 FGVAFIDTATGELQMLEFEDDKECSKFDTLMSQIKP 510
>UniRef50_Q55GU9 Cluster: DNA mismatch repair protein; n=1;
Dictyostelium discoideum AX4|Rep: DNA mismatch repair
protein - Dictyostelium discoideum AX4
Length = 1260
Score = 94.7 bits (225), Expect = 2e-18
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Frame = +3
Query: 90 KSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPD 269
K +K+T TTA K +++ K EE S +L I+DA DHPD
Sbjct: 297 KKSKSTTTTAVKKKGNAFGKKDKKEIEERYS----------FLV--NIKDANGNPKDHPD 344
Query: 270 YNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS 449
Y+ RTL++P L +P +Q+W +KS N+D V+FFK GKFYELY DA +G +L
Sbjct: 345 YDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYESDADIGHQQLHLK 404
Query: 450 YM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+ + G PE ++ AS L+ G+K+A
Sbjct: 405 LTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA 436
Score = 38.3 bits (85), Expect = 0.17
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 536 NSFAVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
+++ +A + + YGVCF+D SIG F+L +DD + + T L P
Sbjct: 488 STYLMAIKENEYDKQYGVCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMP 538
>UniRef50_Q8I447 Cluster: DNA repair protein, putative; n=3;
Plasmodium|Rep: DNA repair protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 1350
Score = 93.1 bits (221), Expect = 6e-18
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLK--------SQTPAHQQWWIMKSTNFDC 368
W++P IRD R PDH DY+ T++ PP K TP QQ+W +KS NFD
Sbjct: 363 WIQPQYIRDINLRTPDHADYDSSTIWTPPPDHKWAIEYKQAHYTPGMQQFWKIKSRNFDK 422
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGDF-AHSGFPESAYGRMASTLVSKGYKI 539
++FFK+G+FYE++++DA + ++M G+ H GFPE + A +++ G+K+
Sbjct: 423 IIFFKMGRFYEIFYIDACLMHTICSLNWMSGEHKPHLGFPEQSLHFYAKKVINSGHKV 480
>UniRef50_Q1DLI8 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 1127
Score = 91.9 bits (218), Expect = 1e-17
Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
Frame = +3
Query: 69 YEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMK 248
Y+PN T + +TT S L ++ K+ E + WL I D K
Sbjct: 261 YDPNDT--ECRQHRTTLAPLSSKSLGKKKEKAHLTEPEK------RYPWLA--NILDMDK 310
Query: 249 RKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVG 428
P HPDY+PRTLY+PP +P +Q+W +K +D V+FFK GKFYELY DA +G
Sbjct: 311 NPPGHPDYDPRTLYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIG 370
Query: 429 VNELGFSYM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+ + G PES+ A+ V+KG+KIA
Sbjct: 371 HQLFDLKLTDRVNMRMVGVPESSLEYWANQFVAKGFKIA 409
Score = 37.1 bits (82), Expect = 0.40
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 545 AVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
AV E +D ++GV F+DT+ G F L +F DD ++ T +A P
Sbjct: 464 AVKEALVDDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVAQTRP 511
>UniRef50_O74502 Cluster: DNA mismatch repair protein msh6; n=1;
Schizosaccharomyces pombe|Rep: DNA mismatch repair
protein msh6 - Schizosaccharomyces pombe (Fission yeast)
Length = 1254
Score = 91.5 bits (217), Expect = 2e-17
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 84 TPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDH 263
+P + + T +K+ + EE + + E N + + +WL +RDA + +
Sbjct: 301 SPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKEN--NERYEWLLD--VRDADQNRVGD 356
Query: 264 PDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELG 443
P+Y+PRTLY+PP + P +Q+W +K D V+FF+ GKFYELY DAA+G
Sbjct: 357 PNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQVFS 416
Query: 444 FSYM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+ + G PE+++ AS ++KGY+IA
Sbjct: 417 LKLTDRVNMKMVGIPEASFDYWASQFIAKGYRIA 450
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 557 QAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
Q+ N+ S+G+CFIDTS G FH+ +F DD H ++L T L P
Sbjct: 511 QSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRP 554
>UniRef50_A3GHU7 Cluster: Mismatch repair ATPase MSH6; n=5;
Saccharomycetales|Rep: Mismatch repair ATPase MSH6 -
Pichia stipitis (Yeast)
Length = 1212
Score = 91.1 bits (216), Expect = 2e-17
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Frame = +3
Query: 111 TTAGSKSKTILP-EENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTL 287
T +K K+I P + PK + ++ + WL +RDA KR D P+Y+PRTL
Sbjct: 253 TQPATKPKSITPVKTTPKKNFSKENEERY-----QWLVD--VRDAEKRTTDDPNYDPRTL 305
Query: 288 YVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDF 467
+VP T +Q+W +KS ++ V+FFK GKFYELY DA + E G
Sbjct: 306 HVPQSAWSKFTAFEKQYWEIKSKMYNTVVFFKKGKFYELYENDATIANTEFDLKIAGGGR 365
Query: 468 AH---SGFPESAYGRMASTLVSKGYKIA 542
A+ +G PE ++ A +S GYK+A
Sbjct: 366 ANMKLAGIPEMSFEYWAKEFISHGYKVA 393
>UniRef50_A1CXE2 Cluster: DNA mismatch repair protein Msh6,
putative; n=15; Pezizomycotina|Rep: DNA mismatch repair
protein Msh6, putative - Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 1214
Score = 91.1 bits (216), Expect = 2e-17
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Frame = +3
Query: 69 YEP-NQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAM 245
Y+P N P+ N+ + T S + + + + EE + WL IRD
Sbjct: 248 YDPENLEPRQNRAIQATPKSTATPAKQKVHLREPEE----------RYPWLA--NIRDID 295
Query: 246 KRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAV 425
PDHPDY+PRT+Y+PP +P +Q+W +K +D V+FFK GKFYELY DA +
Sbjct: 296 GHAPDHPDYDPRTIYIPPLAWAKFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATI 355
Query: 426 GVNELGFSYM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
G + + G PE + A+ V+KG+KIA
Sbjct: 356 GHQLFDLKLTDRVNMRMVGVPEMSLDHWANQFVAKGFKIA 395
>UniRef50_A5KAY3 Cluster: DNA repair protein, putative; n=2;
Plasmodium|Rep: DNA repair protein, putative -
Plasmodium vivax
Length = 1289
Score = 89.8 bits (213), Expect = 5e-17
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 9/118 (7%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPP-------DFLKSQ-TPAHQQWWIMKSTNFDC 368
W++P +RD R PD+ DY+ T++ PP ++ ++ TP QQ+W +KS NFD
Sbjct: 283 WVQPQYVRDLNLRTPDNADYDCSTIWTPPPDHPWAVEYKQAHYTPGMQQFWKIKSKNFDK 342
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGD-FAHSGFPESAYGRMASTLVSKGYKI 539
++FFK+G+FYE++++DA + G ++M G+ H GFPE + A +++ G+K+
Sbjct: 343 IIFFKMGRFYEIFYIDACLMHTICGLNWMGGEQKPHLGFPEQSLHLYAKKVINSGHKV 400
>UniRef50_Q03834 Cluster: MutS protein homolog 6; n=6; Fungi/Metazoa
group|Rep: MutS protein homolog 6 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 1242
Score = 89.8 bits (213), Expect = 5e-17
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = +3
Query: 60 SFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHC-KLDWLKPDKIR 236
S + N + ++K + S++ P + S +SS N + + WL + R
Sbjct: 227 SSPFTRNISRDNSKKKSRPNQAPSRSYNPSHSQPSATSKSSKFNKQNEERYQWLVDE--R 284
Query: 237 DAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMD 416
DA +R P+Y+PRTLY+P TP +Q+W +KS +DC++FFK GKF+ELY D
Sbjct: 285 DAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKD 344
Query: 417 AAVGVNELGFSYMKGDFAH---SGFPESAYGRMASTLVSKGYKIA 542
A + G A+ +G PE ++ A+ + GYK+A
Sbjct: 345 ALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVA 389
>UniRef50_Q23AD6 Cluster: MutS domain III family protein; n=2;
Tetrahymena thermophila|Rep: MutS domain III family
protein - Tetrahymena thermophila SB210
Length = 1139
Score = 89.4 bits (212), Expect = 7e-17
Identities = 39/93 (41%), Positives = 58/93 (62%)
Frame = +3
Query: 261 HPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNEL 440
+P Y+P TLY+PP T A +Q+W +K+ +FD ++ FK+GKFYEL++ DA + L
Sbjct: 207 NPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAKHFDKIILFKMGKFYELFYEDAIIATRLL 266
Query: 441 GFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
++ + H GFPE A + AS LV GYK+
Sbjct: 267 DITFTNKEL-HCGFPEKALEKFASKLVQFGYKV 298
>UniRef50_A2EA54 Cluster: MutS domain III family protein; n=1;
Trichomonas vaginalis G3|Rep: MutS domain III family
protein - Trichomonas vaginalis G3
Length = 1057
Score = 87.8 bits (208), Expect = 2e-16
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKR 251
+P ++ KS ++ KTT + PE N E+S DWL K+RD K+
Sbjct: 110 KPAKSTKS-RSIKTTKAAVPFDAPPEVNHAQIAREASASVSEEDLPDWLTT-KLRDKNKK 167
Query: 252 KPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA--AV 425
+PD Y+P T+Y+P ++ TP +Q+W +K NFD ++ + GKFYE++ +DA A
Sbjct: 168 RPDKEGYDPSTVYIPETVKETFTPFQKQFWDIKENNFDAIVMIRKGKFYEMFSVDAIFAR 227
Query: 426 GVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
V +L +Y +G G PE A+ A +++ G ++
Sbjct: 228 DVLKLHLTY-RGKEPMCGVPEKAFSEWAIKIINAGKRV 264
>UniRef50_Q4UGD4 Cluster: DNA mismatch repair protein, MutS family,
putative; n=2; Theileria|Rep: DNA mismatch repair
protein, MutS family, putative - Theileria annulata
Length = 1279
Score = 87.0 bits (206), Expect = 4e-16
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 9/118 (7%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPP-------DFLKSQ-TPAHQQWWIMKSTNFDC 368
WL+P ++DA R+P Y+ TL++PP +F T QQWW +K T+FD
Sbjct: 263 WLEPRNLKDAEGRRPLAEGYDTTTLWIPPRGHRWAYEFRSGHYTECMQQWWEVKKTHFDS 322
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGDF-AHSGFPESAYGRMASTLVSKGYKI 539
++FFK+GKFYEL++ DA V G +M + H GFPE + AS V+ G+++
Sbjct: 323 LVFFKMGKFYELFYQDACVVQGLTGLRWMGAETKPHVGFPEKSIHFYASACVNAGHRV 380
>UniRef50_A0BIQ0 Cluster: Chromosome undetermined scaffold_11, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_11,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1108
Score = 86.2 bits (204), Expect = 7e-16
Identities = 42/109 (38%), Positives = 61/109 (55%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGK 392
W RD + D +P TL++P + T QQ+W KS NFD ++FFK+GK
Sbjct: 193 WATIGSSRDKSGKLHGTSDADPTTLFIPQNEFNKLTKCMQQFWKYKSENFDKIIFFKLGK 252
Query: 393 FYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
FYEL++ DA +G L ++M G H+GFPE A + + L+ GYK+
Sbjct: 253 FYELFYEDAYIGNKYLDLNWM-GRKMHTGFPEKAVHKYKALLLEYGYKV 300
>UniRef50_UPI00004983EC Cluster: mutS family protein; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: mutS family protein -
Entamoeba histolytica HM-1:IMSS
Length = 934
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +3
Query: 231 IRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYH 410
I+D ++ Y+P TL++P L TP +Q+W +K N+D V+FF GKFYELY
Sbjct: 41 IKDKNQKSIGEQGYDPSTLFIPASCLMKMTPFEKQYWNIKKDNYDVVIFFAKGKFYELYE 100
Query: 411 MDAAVGVNELGFSYM-KGDFAHSGFPESAYGRMASTLVSKGYKI 539
DA +G ELG + + +G P++++ AS L+ GYKI
Sbjct: 101 NDADIGNKELGLKITNRVNMRMAGVPKASFNTYASKLLELGYKI 144
>UniRef50_A7T736 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 357
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/70 (60%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = +3
Query: 267 DYNPRTLYVPPDFLKSQ--TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNEL 440
D T VP +L S+ TPA +QWW +KS +FD VLFFKVGKFYELYHMDA GV EL
Sbjct: 71 DDEVNTAMVPQSYLTSKDVTPAMRQWWQLKSEHFDTVLFFKVGKFYELYHMDATTGVKEL 130
Query: 441 GFSYMK-GDF 467
YMK G F
Sbjct: 131 NLIYMKIGQF 140
Score = 36.3 bits (80), Expect = 0.70
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2
Query: 623 LGQFEDDKHSSRLLTTLAHYPP 688
+GQF+DD+ +SRL T +AH+PP
Sbjct: 137 IGQFKDDRQASRLRTLIAHHPP 158
>UniRef50_A7AWU6 Cluster: DNA repair protein, putative; n=1; Babesia
bovis|Rep: DNA repair protein, putative - Babesia bovis
Length = 1313
Score = 83.4 bits (197), Expect = 5e-15
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPP-------DFLKSQ-TPAHQQWWIMKSTNFDC 368
W+ + I+D RKP +Y+P T+++PP ++ T QQWW +K FD
Sbjct: 345 WVCVETIKDRDGRKPTDDNYDPSTIWIPPKGHRWATEYRSGHYTDCMQQWWNIKQDRFDQ 404
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGDF-AHSGFPESAYGRMASTLVSKGYKI 539
+LFFK+G+FYEL++ DA + G +M + H GFPE + AS+ V GYK+
Sbjct: 405 LLFFKMGRFYELFYHDACIVQQICGLRWMGSEAKPHVGFPEKSLHIYASSCVDHGYKV 462
>UniRef50_A3FQP9 Cluster: DNA repair protein; n=2;
Cryptosporidium|Rep: DNA repair protein -
Cryptosporidium parvum Iowa II
Length = 1242
Score = 83.4 bits (197), Expect = 5e-15
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQ-------TPAHQQWWIMKSTNFDCV 371
W++ IRD+ +P P Y+P T++VP + TPA +Q+W +K +FD +
Sbjct: 276 WVQLRNIRDSKGTRPLDPCYDPSTIWVPSSNSREAKEERMHFTPAMEQYWELKKEHFDKL 335
Query: 372 LFFKVGKFYELYHMDAAVGVNELGFSYMKGDF-AHSGFPESAYGRMASTLVSKGYKI 539
LFFK+GKFYEL+++DA + + D H GFPE+A A+ LV GY++
Sbjct: 336 LFFKMGKFYELFYIDAYICQKHCDLRWTSSDSKPHVGFPETALHAYANKLVELGYRV 392
>UniRef50_Q8SR47 Cluster: DNA MISMATCH REPAIR PROTEIN OF THE MUTS
FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA MISMATCH
REPAIR PROTEIN OF THE MUTS FAMILY - Encephalitozoon
cuniculi
Length = 922
Score = 80.6 bits (190), Expect = 3e-14
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Frame = +3
Query: 78 NQTPKSNKNTKTTAGSKSKTIL--PEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKR 251
N+ ++T+T SKS IL EEN + + E+ ++ + +RD R
Sbjct: 64 NEPVDLQEDTQTQQASKSGRILMGDEENERRRVEKEERYRFL---------EDVRDRNGR 114
Query: 252 KPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGV 431
+ Y+P TL +P K TP +Q+W +K FD ++FFK GKFYELY DA VG
Sbjct: 115 RRGDEGYDPSTLLIPEHEYKKFTPFEKQFWDIKKDFFDTIVFFKKGKFYELYENDALVGA 174
Query: 432 NELGFSYM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+ + SGFPE + + + GYKIA
Sbjct: 175 RLFDLKITDRVNMKMSGFPEGSLDYWSRKFLEHGYKIA 212
>UniRef50_Q6C0A2 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 1149
Score = 79.0 bits (186), Expect = 1e-13
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +3
Query: 231 IRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYH 410
I+DA PDY+PRTLY+P T +Q+W +KS ++ V+FFK GKFYELY
Sbjct: 243 IKDAQGNPEGSPDYDPRTLYIPSSAWSKFTAFEKQYWEVKSKMWNTVVFFKKGKFYELYE 302
Query: 411 MDAAVGVNELGFSYMKGDFAH---SGFPESAYGRMASTLVSKGYKIA 542
DA + +E G A+ G PE ++ ++ + G+K+A
Sbjct: 303 RDADIAHSEFDLKLAGGGRANMRLCGVPEMSFFSWSNAFIKNGHKVA 349
Score = 36.3 bits (80), Expect = 0.70
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 569 DSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
+ S V F+DT+ G FH FEDD S+ T +A P
Sbjct: 408 EGSRIAVAFVDTASGAFHTSSFEDDADFSKFETLVAQIRP 447
>UniRef50_Q5K9A8 Cluster: Mismatch repair-related protein, putative;
n=2; Filobasidiella neoformans|Rep: Mismatch
repair-related protein, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 1205
Score = 77.0 bits (181), Expect = 4e-13
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Frame = +3
Query: 72 EPNQTP-KSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMK 248
+P TP + GS+S + L K + + C D+L IRD
Sbjct: 219 KPTTTPIRPGPKPVANKGSESNSFLTAAERKKIQAKEDKRESEQC-FDFLV--NIRDKEG 275
Query: 249 RKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVG 428
+PD PDY+ R++ +P TP +Q+W +K ++D VLFF+ GKFYELY DA +G
Sbjct: 276 NRPDDPDYDKRSILIPKKSWAEFTPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIG 335
Query: 429 VNELGFSYM-KGDFAHSGFPESAYGRMASTLVSKGYKI 539
E + G PE + + + G+K+
Sbjct: 336 HQEFDLKLTDRVKMKMVGVPEQSLEFWIAKFLGAGHKV 373
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 575 SSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
SS+G+C D S G F + FEDD +RL T P
Sbjct: 442 SSFGICIADASTGEFSISFFEDDVCRTRLETMFRQIRP 479
>UniRef50_Q4Q1M8 Cluster: Mismatch repair protein MSH8, putative;
n=3; Leishmania|Rep: Mismatch repair protein MSH8,
putative - Leishmania major
Length = 1014
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Frame = +3
Query: 264 PDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELG 443
P P T+ +P +L + +Q+W +KS +++ V+FFK GKFYELY DA + E G
Sbjct: 25 PTAPPSTISIPHKYLDAMANMERQYWDIKSKHYNVVIFFKKGKFYELYDYDAVIANREFG 84
Query: 444 FSYM-----KGDFAHSGFPESAYGRMASTLVSKGYKI 539
+ +G +G PE +Y A V +GYK+
Sbjct: 85 LKMVLDTSNRGKMRLAGVPEQSYNEWARLFVYRGYKV 121
>UniRef50_Q4E4A8 Cluster: Mismatch repair protein MSH6, putative;
n=3; Trypanosoma|Rep: Mismatch repair protein MSH6,
putative - Trypanosoma cruzi
Length = 1002
Score = 65.3 bits (152), Expect = 1e-09
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +3
Query: 276 PRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYM 455
P ++ +P L + +Q+W +K+ FD ++ FK GKFYELY DAA+ E G +
Sbjct: 30 PSSITIPAKELDAMAGMERQYWEIKAKYFDVLILFKKGKFYELYDQDAAIAHREFGLKLV 89
Query: 456 -----KGDFAHSGFPESAYGRMASTLVSKGYKI 539
+G +G PE ++ A V +GYK+
Sbjct: 90 FSATNRGKMRLAGVPEQSFSEWARLFVFRGYKV 122
>UniRef50_A0DMV3 Cluster: Chromosome undetermined scaffold_57, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_57,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1111
Score = 60.5 bits (140), Expect = 4e-08
Identities = 24/71 (33%), Positives = 46/71 (64%)
Frame = +3
Query: 213 WLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGK 392
+++PD IRDA R+P+ P+Y+P TL +P + +P +Q+W K ++D ++FF+ G+
Sbjct: 127 FVQPDFIRDAEGRRPNDPNYDPSTLDIPIAQYQKLSPMFRQYWNAKKAHYDSLVFFRCGR 186
Query: 393 FYELYHMDAAV 425
+ + + DA +
Sbjct: 187 WINVMYNDAII 197
>UniRef50_Q97I19 Cluster: DNA mismatch repair protein mutS; n=10;
Bacteria|Rep: DNA mismatch repair protein mutS -
Clostridium acetobutylicum
Length = 869
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +3
Query: 312 SQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFA------H 473
S +P QQ+ +K + DC+LFF+VG FYE++ DA V EL D
Sbjct: 2 SISPMMQQYLSIKENHKDCILFFRVGDFYEMFFEDAEVASRELELVLTGKDCGLEKRAPM 61
Query: 474 SGFPESAYGRMASTLVSKGYKIA 542
G P AY AS LVSKGYK+A
Sbjct: 62 CGVPHHAYAIYASKLVSKGYKVA 84
>UniRef50_A0MNQ7 Cluster: Putative mismatch repair protein; n=1;
Tetrahymena thermophila|Rep: Putative mismatch repair
protein - Tetrahymena thermophila
Length = 1257
Score = 60.1 bits (139), Expect = 5e-08
Identities = 37/126 (29%), Positives = 62/126 (49%)
Frame = +3
Query: 162 SQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWW 341
+Q EE D V ++L+ + I+D K +Y+P TL++ LK P +++W
Sbjct: 262 AQNEEIVDETDVGELPEFLQKENIKDKKGNKIGSENYDPTTLFIEESQLKIFKPYMREYW 321
Query: 342 IMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLV 521
+KS ++D ++ K+G+FYE Y+ D+ V L Y + + GFPE S L
Sbjct: 322 RIKSDHYDKIVLIKLGRFYEAYYEDSFVCNQILQPKYSRKN--KCGFPEEILYPYLSKLT 379
Query: 522 SKGYKI 539
K+
Sbjct: 380 ECNLKV 385
>UniRef50_Q2FU04 Cluster: DNA mismatch repair protein MutS; n=4;
Methanomicrobia|Rep: DNA mismatch repair protein MutS -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 892
Score = 53.2 bits (122), Expect = 6e-06
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKG------DFAHS 476
TPA QQ++ K DCV+FF++G FYE + DA + EL + +G D +
Sbjct: 23 TPAMQQFYDAKQQYPDCVIFFRMGDFYETFCEDAQICARELDITLTSRGRMPDGQDIPLA 82
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A S ++SKGYK+A
Sbjct: 83 GVPYHAVDTYLSRMISKGYKVA 104
>UniRef50_P61668 Cluster: DNA mismatch repair protein mutS; n=89;
Lactobacillales|Rep: DNA mismatch repair protein mutS -
Lactobacillus johnsonii
Length = 857
Score = 51.6 bits (118), Expect = 2e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVG--VNELGFSY----MKGDFA 470
K TP +Q++ +K D LF++VG FYEL+ DA G + EL ++ K
Sbjct: 4 KDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRSNKTKNPIP 63
Query: 471 HSGFPESAYGRMASTLVSKGYKIA 542
+G P A +TLV KGYK+A
Sbjct: 64 MAGVPHLAVDTYVNTLVEKGYKVA 87
>UniRef50_O66652 Cluster: DNA mismatch repair protein mutS; n=2;
Aquifex|Rep: DNA mismatch repair protein mutS - Aquifex
aeolicus
Length = 859
Score = 51.2 bits (117), Expect = 2e-05
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYM-------KGDF 467
K TP Q+ K+ DC+L F++G FYEL++ DA +G ELG K
Sbjct: 6 KELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRPAGKGKERI 65
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
G P + + LV+KGYK+A
Sbjct: 66 PMCGVPYHSANSYIAKLVNKGYKVA 90
>UniRef50_A4XL47 Cluster: DNA mismatch repair protein MutS; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep: DNA
mismatch repair protein MutS - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 863
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHS--- 476
++ TP QQ+ +K DC+LFF++G FYE++ DA + EL + D ++
Sbjct: 1 MQELTPMMQQYMEIKQRVKDCILFFRLGDFYEMFFDDAIIASKELEIALTARDCGNNEKA 60
Query: 477 ---GFPESAYGRMASTLVSKGYKIA 542
G P + + L+ KGYK+A
Sbjct: 61 PMCGVPYHSAHSYIAKLIEKGYKVA 85
>UniRef50_P0C1S1 Cluster: DNA mismatch repair protein mutS; n=25;
Bacillales|Rep: DNA mismatch repair protein mutS -
Staphylococcus aureus
Length = 872
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------F 467
+ + TP QQ+ +KS DC+LFF++G FYE+++ DA L + K D
Sbjct: 1 MSNVTPMMQQYLKIKSEYQDCLLFFRLGDFYEMFYEDAKEASRVLEITLTKRDAKKENPI 60
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
G P + TLV+ GYK+A
Sbjct: 61 PMCGVPYHSADSYIDTLVNNGYKVA 85
>UniRef50_A6NSZ4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 869
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAH-------- 473
TP +Q+ MK + DC+LFF++G FYE+++ DA V EL + D +
Sbjct: 6 TPMMRQYIRMKELHPDCLLFFRLGDFYEMFNEDAKVASRELELTLTSRDRSKPAEERTPM 65
Query: 474 SGFPESAYGRMASTLVSKGYKIA 542
G P + + L++KGYK+A
Sbjct: 66 CGVPYHSADAYIARLIAKGYKVA 88
>UniRef50_Q8XL87 Cluster: DNA mismatch repair protein mutS; n=15;
Clostridia|Rep: DNA mismatch repair protein mutS -
Clostridium perfringens
Length = 909
Score = 49.2 bits (112), Expect = 9e-05
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFA------HSG 479
TP +Q++ +K DC+LFF++G FYE++ DA EL D G
Sbjct: 4 TPMMRQYFEIKENYKDCILFFRLGDFYEMFFEDAETAARELELVLTGRDCGLEKRAPMCG 63
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A LV+KGYK+A
Sbjct: 64 IPFHASNSYIGRLVAKGYKVA 84
>UniRef50_Q3ACA5 Cluster: DNA mismatch repair protein mutS; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: DNA
mismatch repair protein mutS - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 841
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +3
Query: 312 SQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHS----- 476
S TP +Q+ +K DC+LFF++G FYEL+ DA + EL D
Sbjct: 2 SFTPMMKQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAGQEERVPM 61
Query: 477 -GFP-ESAYGRMASTLVSKGYKIA 542
G P SA G +A L+S+GYK+A
Sbjct: 62 CGVPYHSAQGYIAK-LLSRGYKVA 84
>UniRef50_Q5FLX5 Cluster: DNA mismatch repair protein mutS; n=5;
Lactobacillales|Rep: DNA mismatch repair protein mutS -
Lactobacillus acidophilus
Length = 856
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Frame = +3
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVG--VNELGFSY----MKGDFAHSGFPES 491
+Q++ +K D LF++VG FYEL+ DA G + EL ++ K +G P
Sbjct: 3 EQYYEIKKQYPDAFLFYRVGDFYELFEEDAVKGAQILELTLTHRSNKTKNPIPMAGVPHM 62
Query: 492 AYGRMASTLVSKGYKIA 542
A +TLV KGYK+A
Sbjct: 63 AVDTYVNTLVEKGYKVA 79
>UniRef50_Q9Z6W5 Cluster: DNA mismatch repair protein mutS; n=15;
Chlamydiaceae|Rep: DNA mismatch repair protein mutS -
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 828
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKGDFAHSGFP 485
K TP +QW K D VL F++G FYE ++ DA + L + + SG P
Sbjct: 4 KKPTPMMEQWHQCKEKAGDSVLLFRMGDFYEAFYDDAVLLSQHLELTLTQRQGIPMSGIP 63
Query: 486 ESAYGRMASTLVSKGYKIA 542
S L+ KG+K+A
Sbjct: 64 VSTVDTYVDRLIGKGFKVA 82
>UniRef50_Q2LUL3 Cluster: DNA mismatch repair protein; n=6;
Bacteria|Rep: DNA mismatch repair protein - Syntrophus
aciditrophicus (strain SB)
Length = 880
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF---SYMKG---DF 467
+ S TPA +Q+ +K+ + DC++ F++G FYE++ DA L S KG
Sbjct: 9 ISSLTPAMKQYAEVKALHKDCIVLFRMGDFYEIFFEDAVTASKILDITLTSRNKGKEDSI 68
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
GFP A L+ KG+K+A
Sbjct: 69 PLCGFPYHASSTYIPKLIEKGFKVA 93
>UniRef50_Q5C367 Cluster: SJCHGC08145 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08145 protein - Schistosoma
japonicum (Blood fluke)
Length = 182
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 60 SFKYEPNQTPKSNKN-TKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIR 236
S+ Y P+ KS K+ T S S+ KS EE S +W H L +L+P KI+
Sbjct: 111 SYLYSPHHIKKSGKSRVDATDESLSEIDGTARINKSFCEEESV-SWTHLSLSFLEPAKIK 169
Query: 237 DAMKRKPDHPDYN 275
D R+PDHP+Y+
Sbjct: 170 DINGRRPDHPEYD 182
>UniRef50_Q9ZDM9 Cluster: DNA mismatch repair protein mutS; n=11;
Rickettsieae|Rep: DNA mismatch repair protein mutS -
Rickettsia prowazekii
Length = 891
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDFAHSG 479
T QQ+ +K + DC+L F++G FYEL++ DA + N LG + K + G
Sbjct: 21 TKMMQQYLDIKFAHLDCLLLFRMGDFYELFYEDAILASNILGIALTKRGKNCEEEIPMCG 80
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A + L+ + YK+A
Sbjct: 81 VPYHALEHYLTKLIEENYKVA 101
>UniRef50_Q0EUR1 Cluster: DNA mismatch repair protein MutS; n=4;
Clostridia|Rep: DNA mismatch repair protein MutS -
Thermoanaerobacter ethanolicus X514
Length = 867
Score = 46.8 bits (106), Expect = 5e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFA------HSG 479
TP +Q+ +K D +LFF++G FYE+++ DA + EL + D +G
Sbjct: 4 TPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAG 63
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A L+ KGYK+A
Sbjct: 64 VPYHAADFYIDKLIKKGYKVA 84
>UniRef50_Q3ZYA0 Cluster: DNA mismatch repair protein mutS; n=3;
Dehalococcoides|Rep: DNA mismatch repair protein mutS -
Dehalococcoides sp. (strain CBDB1)
Length = 858
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAH---- 473
+++ TP +Q+ +K + ++FF++G FYE + DA + EL +
Sbjct: 1 MENTTPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60
Query: 474 --SGFPESAYGRMASTLVSKGYKIA 542
+G P A S L++KGYK+A
Sbjct: 61 PLAGIPYHALDNYLSRLINKGYKVA 85
>UniRef50_Q6MBV4 Cluster: DNA mismatch repair protein mutS; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: DNA
mismatch repair protein mutS - Protochlamydia
amoebophila (strain UWE25)
Length = 858
Score = 46.4 bits (105), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK-GDFAHSGFPESA 494
+P QW K D +LFF++G FYE ++ DA + EL + K + SG P
Sbjct: 26 SPMMMQWHACKKMAGDAILFFRMGDFYEAFYEDAHLLSKELELTLTKRQEIPMSGIPFHT 85
Query: 495 YGRMASTLVSKGYKIA 542
LV+KG+++A
Sbjct: 86 SEGYIDKLVAKGFRVA 101
>UniRef50_A4RYB5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 958
Score = 46.0 bits (104), Expect = 9e-04
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = +3
Query: 258 DHPDYNPRTLYVPP-DFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA----A 422
D ++P +L + DF K +Q+W +K DCV+ K G FY ++ +DA A
Sbjct: 9 DDGRFDPSSLRIEDGDFSKINGEFAKQFWRIKMQLMDCVVMVKHGSFYNMFDVDADAGKA 68
Query: 423 VGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
VG+ + G + G G ++ A+ L+++GY +A
Sbjct: 69 VGLQQTGTN--SGFMRKVGCRAESFDTWAARLLARGYTVA 106
>UniRef50_Q1IN52 Cluster: DNA mismatch repair protein MutS; n=2;
Acidobacteria|Rep: DNA mismatch repair protein MutS -
Acidobacteria bacterium (strain Ellin345)
Length = 882
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYM-----KGD-FAHSG 479
TP +QW +K + + +LFF++G FYEL+ DA + EL + KG+ G
Sbjct: 6 TPLMKQWAQVKRDHPNALLFFRLGDFYELFFDDAVIAARELQITLTARNKEKGNSVPMCG 65
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A S L+ +G+K+A
Sbjct: 66 VPYHAAENYISKLIRRGFKVA 86
>UniRef50_Q0AYB5 Cluster: DNA mismatch repair protein; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA mismatch repair protein - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 859
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------FAHSG 479
TP QQ+ +K D +LFF++G FYE++ DA + EL D G
Sbjct: 5 TPMMQQYLQIKEEQQDAILFFRLGDFYEMFFEDARIASRELEIVLTARDGGAGSKIPMCG 64
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P + + L+++GYK+A
Sbjct: 65 VPYHSVDNYLARLINRGYKVA 85
>UniRef50_A4J5Q6 Cluster: DNA mismatch repair protein MutS; n=4;
Clostridia|Rep: DNA mismatch repair protein MutS -
Desulfotomaculum reducens MI-1
Length = 868
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAH------SG 479
TP QQ+ +K + + +LFF++G FYE++ DA + EL + D G
Sbjct: 4 TPMMQQYLDIKKQHPNTILFFRLGDFYEMFFEDAKLASQELEITLTGRDAGEPERVPMCG 63
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A S L+ KGYK+A
Sbjct: 64 VPFHAADSYISKLIEKGYKVA 84
>UniRef50_Q8RFK2 Cluster: DNA mismatch repair protein mutS; n=4;
Fusobacterium nucleatum|Rep: DNA mismatch repair protein
mutS - Fusobacterium nucleatum subsp. nucleatum
Length = 896
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDF 467
+ + TP QQ+ +K + +L F++G FYE++ DA + ELG + K D
Sbjct: 20 MSADTPLMQQYKKIKEEYQNEILMFRLGDFYEMFFEDAKIASKELGLTLTKRNREKGQDV 79
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
+G P + + LV KGY +A
Sbjct: 80 PLAGVPYHSVASYIAKLVEKGYSVA 104
>UniRef50_P56883 Cluster: DNA mismatch repair protein mutS; n=34;
Alphaproteobacteria|Rep: DNA mismatch repair protein
mutS - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 916
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS------YMKGDFAHSG 479
TP +Q+ +K+ N D +LF+++G FYEL+ DA LG + +M + G
Sbjct: 30 TPMMEQFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMGQEIPMCG 89
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A L++ GY++A
Sbjct: 90 VPVHAADDYLQKLIASGYRVA 110
>UniRef50_Q11B27 Cluster: DNA mismatch repair protein MutS; n=41;
Bacteria|Rep: DNA mismatch repair protein MutS -
Mesorhizobium sp. (strain BNC1)
Length = 881
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +3
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDFAHSGFPES 491
QQ+ +K+ + DC+LF+++G FYEL+ DA V LG + K D G P
Sbjct: 3 QQYIEIKAAHADCLLFYRMGDFYELFFDDAEVASRALGITLTKRGKHRGEDIPMCGVPVH 62
Query: 492 AYGRMASTLVSKGYKIA 542
A L++ G+++A
Sbjct: 63 AADDYLQKLIALGHRVA 79
>UniRef50_Q5FPT5 Cluster: DNA mismatch repair protein MutS; n=4;
Acetobacteraceae|Rep: DNA mismatch repair protein MutS -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 883
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +3
Query: 291 VPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYM----- 455
+P ++ +PA QW+ +K D +LFF++G FYEL+ DA L +
Sbjct: 1 MPLPTAENASPAMAQWFDLKHQEPDALLFFRMGDFYELFFSDAQAAAMALDIALTARGTH 60
Query: 456 KGD-FAHSGFPESAYGRMASTLVSKGYKIA 542
+G+ G P +A S L+ +G+++A
Sbjct: 61 QGEPIPMCGVPVAAAPAYLSRLIRRGFRVA 90
>UniRef50_A6C3E3 Cluster: DNA mismatch repair protein; n=2;
Planctomycetales|Rep: DNA mismatch repair protein -
Planctomyces maris DSM 8797
Length = 866
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHS---- 476
K TP +++ +K N +L F++G FYEL+H DA + LG + D S
Sbjct: 6 KKLTPMMERYLEVKRQNPGTLLLFRMGDFYELFHEDAEIAARILGITLTSRDKTSSNPIP 65
Query: 477 --GFPESAYGRMASTLVSKGYK 536
GFP + L+ GY+
Sbjct: 66 MAGFPHHSLDNYLYKLIHAGYR 87
>UniRef50_Q194I0 Cluster: DNA mismatch repair protein MutS; n=2;
Desulfitobacterium hafniense|Rep: DNA mismatch repair
protein MutS - Desulfitobacterium hafniense (strain
DCB-2)
Length = 850
Score = 42.7 bits (96), Expect = 0.008
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------FAHSG 479
TP QQ+ +KS D +LFF++G FYE++ DA L + D G
Sbjct: 3 TPMMQQYKSIKSQAPDAILFFRLGDFYEMFGEDARTAAPVLEIALTGRDSGGGERIPMCG 62
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A LVS GYK+A
Sbjct: 63 VPHHAVDGYLLKLVSAGYKVA 83
>UniRef50_Q67NK1 Cluster: DNA mismatch repair protein mutS; n=4;
Bacteria|Rep: DNA mismatch repair protein mutS -
Symbiobacterium thermophilum
Length = 875
Score = 42.7 bits (96), Expect = 0.008
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNEL-----GFSYMK--GDFAHS 476
TP Q+ +K DC+LF+++G FYE + DA + EL G K G +
Sbjct: 7 TPMFAQYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELELVLTGRDAGKDMGRVPMA 66
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A + L+ KGYK+A
Sbjct: 67 GIPYHAAEAYIARLIEKGYKVA 88
>UniRef50_Q7MXR7 Cluster: DNA mismatch repair protein mutS; n=25;
Bacteria|Rep: DNA mismatch repair protein mutS -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 891
Score = 42.7 bits (96), Expect = 0.008
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +3
Query: 315 QTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK-----GDFAH-S 476
+TP +Q++ +K + D +L F+VG FYE + DA V LG + + F +
Sbjct: 7 ETPLMRQYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELA 66
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
GFP A LV G ++A
Sbjct: 67 GFPHHALDTYLPKLVRAGKRVA 88
>UniRef50_Q7UP05 Cluster: DNA mismatch repair protein mutS; n=2;
Planctomycetaceae|Rep: DNA mismatch repair protein mutS
- Rhodopirellula baltica
Length = 891
Score = 42.3 bits (95), Expect = 0.011
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------FAHSG 479
TP +Q+ K D +LFF++G FYEL+ DA V LG + D A +G
Sbjct: 2 TPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGILGLTLTSRDKDSENPTAMAG 61
Query: 480 FPESAYGRMASTLVSKGYKIA 542
FP + L+ G++ A
Sbjct: 62 FPHHQLDQYLQKLIRAGFRAA 82
>UniRef50_Q6MLQ3 Cluster: DNA mismatch repair protein; n=1;
Bdellovibrio bacteriovorus|Rep: DNA mismatch repair
protein - Bdellovibrio bacteriovorus
Length = 840
Score = 41.5 bits (93), Expect = 0.019
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY------MKGDF 467
+ + TP +Q+W +KS + D +L F++G F+E++ DA LG + + +
Sbjct: 1 MSNLTPLMKQFWDIKSVHQDKILLFRMGDFFEMFFDDAVKAAPVLGIALTQRNKKSQDET 60
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
G P + + L++ G+KIA
Sbjct: 61 PMCGVPHHSIAGPINKLLAAGFKIA 85
>UniRef50_Q9PCR2 Cluster: DNA mismatch repair protein mutS; n=287;
cellular organisms|Rep: DNA mismatch repair protein mutS
- Xylella fastidiosa
Length = 868
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDF 467
+ TP +Q++ K+ D +LFF++G FYEL+H DA L + +
Sbjct: 11 MAEHTPLMKQYFAAKAEYPDLLLFFRMGDFYELFHQDARKAARLLDITLTQRGSSGGAPI 70
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
+G P AY + L++ G +A
Sbjct: 71 PMAGVPVHAYEGYLARLIALGESVA 95
>UniRef50_P74926 Cluster: DNA mismatch repair protein mutS; n=5;
Thermotogaceae|Rep: DNA mismatch repair protein mutS -
Thermotoga maritima
Length = 793
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKG-DFAHSGFPESA 494
TP +Q+ +K D +L F++G FYE + DA + L + D +G P A
Sbjct: 4 TPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRRQDAPMAGIPYHA 63
Query: 495 YGRMASTLVSKGYKIA 542
LV GYK+A
Sbjct: 64 LNTYLKKLVEAGYKVA 79
>UniRef50_Q5FHE8 Cluster: DNA mismatch repair protein mutS; n=9;
Anaplasmataceae|Rep: DNA mismatch repair protein mutS -
Ehrlichia ruminantium (strain Gardel)
Length = 804
Score = 41.5 bits (93), Expect = 0.019
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 312 SQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKGDFAHSGFPE 488
S TP QQ+ +K + +LF+++G FYEL+ DA L KG+ G P
Sbjct: 6 SITPVMQQYVTLKQQYKEYLLFYRLGDFYELFFDDAIKTSKILNIVLTKKGNVPMCGVPF 65
Query: 489 SAYGRMASTLVSKGYKIA 542
+ + LV GYKIA
Sbjct: 66 HSSETYLNKLVKLGYKIA 83
>UniRef50_A1I7K0 Cluster: DNA mismatch repair protein MutS
precursor; n=1; Candidatus Desulfococcus oleovorans
Hxd3|Rep: DNA mismatch repair protein MutS precursor -
Candidatus Desulfococcus oleovorans Hxd3
Length = 881
Score = 41.1 bits (92), Expect = 0.025
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA--AVGVNELGF-SYMKGD---FAHSG 479
TP QQ+ +K + D +LF+++G FYE++ DA A V E+ S K D G
Sbjct: 7 TPMMQQYLSIKEQHRDAILFYRMGDFYEMFFEDAQTAAPVLEIALTSRNKNDTDPIPMCG 66
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A L+ G+K+A
Sbjct: 67 VPVKAADGYIGRLIENGFKVA 87
>UniRef50_Q4PBU4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 375
Score = 40.7 bits (91), Expect = 0.033
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDG-NWVHCKLDWL--KPDKIR 236
K EP Q K KTTA K++ IL E+ +SQ E SD W+H WL PD I
Sbjct: 40 KAEPQQQEPDTKKPKTTASDKTECIL--ESQQSQLESFSDTLTWLHSDTAWLLAHPD-IP 96
Query: 237 DAMKRKPDHPDYNPRTLYVPPD 302
D K + D +T+ PP+
Sbjct: 97 DG-KGETDAAAEGDKTVRTPPE 117
>UniRef50_O83348 Cluster: DNA mismatch repair protein mutS; n=2;
Treponema|Rep: DNA mismatch repair protein mutS -
Treponema pallidum
Length = 900
Score = 40.7 bits (91), Expect = 0.033
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK-GDFAHSGF 482
L S TP +Q+ +++ + D VLFF++G FYE++ DA LG + K G
Sbjct: 4 LASDTPLMRQYHAIRAQHPDAVLFFRLGDFYEMFDSDALHVSTLLGLTLTKRNGTPMCGV 63
Query: 483 PESAYGRMASTLVSKGYKIA 542
P + L+ G K+A
Sbjct: 64 PVHTARTHIARLLKHGKKVA 83
>UniRef50_P73769 Cluster: DNA mismatch repair protein mutS; n=21;
Cyanobacteria|Rep: DNA mismatch repair protein mutS -
Synechocystis sp. (strain PCC 6803)
Length = 878
Score = 40.7 bits (91), Expect = 0.033
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK-------GDFAHS 476
TP Q + +K +L ++VG F+E + DA + EL G A +
Sbjct: 26 TPMFQHYTEVKEQYQGALLLYRVGDFFECFFQDAVIIARELELILTSKEGGKEIGRVAMT 85
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A R A LV KGY +A
Sbjct: 86 GVPHHALDRYARQLVEKGYAVA 107
>UniRef50_A7I7M3 Cluster: DNA mismatch repair protein MutS; n=1;
Candidatus Methanoregula boonei 6A8|Rep: DNA mismatch
repair protein MutS - Methanoregula boonei (strain 6A8)
Length = 903
Score = 40.3 bits (90), Expect = 0.043
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF---SYMK-GD--FA 470
++ TP +Q+ +K+ D +LFF +G F+E DA + EL S K GD
Sbjct: 17 RTLTPGMRQYREIKAQYPDAILFFHIGDFFETLEGDAEIVSKELDLVLTSRSKNGDQRIP 76
Query: 471 HSGFPESAYGRMASTLVSKGYKIA 542
+G P A + LV+KGYK+A
Sbjct: 77 LAGVPHHAGEGYIARLVAKGYKVA 100
>UniRef50_P57972 Cluster: DNA mismatch repair protein mutS; n=8;
Gammaproteobacteria|Rep: DNA mismatch repair protein
mutS - Pasteurella multocida
Length = 860
Score = 40.3 bits (90), Expect = 0.043
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 300 DFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK 458
D L TP +Q+ +K+ N D +LF+++G FYEL++ DA L S K
Sbjct: 2 DNLDLHTPMMRQYLALKAENPDILLFYRMGDFYELFYDDAKKAAALLDISLTK 54
>UniRef50_Q8TTB4 Cluster: DNA mismatch repair protein mutS; n=3;
Methanosarcina|Rep: DNA mismatch repair protein mutS -
Methanosarcina acetivorans
Length = 900
Score = 40.3 bits (90), Expect = 0.043
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKGD------FAHS 476
TPA +Q++ K D ++FF++G FYE + DA EL + +G +
Sbjct: 6 TPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPLA 65
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A L++KGYK+A
Sbjct: 66 GIPYHAIDTYLPRLINKGYKVA 87
>UniRef50_Q8F496 Cluster: DNA mismatch repair protein mutS; n=4;
Leptospira|Rep: DNA mismatch repair protein mutS -
Leptospira interrogans
Length = 848
Score = 40.3 bits (90), Expect = 0.043
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFA--HSGFPES 491
TP +Q+ +K D +LFF++G FYE++ DA + + L + K A G P
Sbjct: 22 TPMMKQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNAVPMCGIPYH 81
Query: 492 AYGRMASTLVSKGYKIA 542
+ S L++ G KIA
Sbjct: 82 SKDNYISRLLNAGKKIA 98
>UniRef50_Q7NLT8 Cluster: DNA mismatch repair protein mutS; n=13;
Cyanobacteria|Rep: DNA mismatch repair protein mutS -
Gloeobacter violaceus
Length = 890
Score = 40.3 bits (90), Expect = 0.043
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF---SYMKGD----FAHS 476
TP QQ+ +K+ + C+L +++G FYE + DA + EL GD +
Sbjct: 22 TPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELEIVLTGRQAGDKIGRIPMA 81
Query: 477 GFPESAYGRMASTLVSKGYKI 539
G P A R + L+ KGY +
Sbjct: 82 GIPHHALERYCAQLIEKGYAV 102
>UniRef50_Q5L0E5 Cluster: DNA mismatch repair protein mutS; n=63;
Bacilli|Rep: DNA mismatch repair protein mutS -
Geobacillus kaustophilus
Length = 896
Score = 40.3 bits (90), Expect = 0.043
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFP------ES 491
QQ+ +K+ D LFF++G FYEL+ DA EL + D P S
Sbjct: 3 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGDERVPMCGVPYHS 62
Query: 492 AYGRMASTLVSKGYKIA 542
A G + L+ KGYK+A
Sbjct: 63 AQGYI-EQLIEKGYKVA 78
>UniRef50_Q8KCC0 Cluster: DNA mismatch repair protein mutS; n=9;
Chlorobiaceae|Rep: DNA mismatch repair protein mutS -
Chlorobium tepidum
Length = 878
Score = 39.5 bits (88), Expect = 0.075
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDFA 470
K TP +Q+ +K +L F+VG FYE + DA + L + G+
Sbjct: 10 KEPTPMMRQYLEVKERYPGYLLLFRVGDFYETFLDDAVTVSSALNIVLTRRSNGGAGEIP 69
Query: 471 HSGFPESAYGRMASTLVSKGYKIA 542
+GFP A + LV+KG+K+A
Sbjct: 70 LAGFPHHASEGYIAKLVTKGFKVA 93
>UniRef50_P61666 Cluster: DNA mismatch repair protein mutS; n=4;
Desulfovibrionaceae|Rep: DNA mismatch repair protein
mutS - Desulfovibrio vulgaris (strain Hildenborough /
ATCC 29579 / NCIMB8303)
Length = 905
Score = 39.1 bits (87), Expect = 0.099
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKGDFAH-----SG 479
TP +Q+ +K D +LF+++G FYEL+ DA EL + + A G
Sbjct: 9 TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A S L+ KGY++A
Sbjct: 69 VPYHAVEGYISQLLDKGYRVA 89
>UniRef50_Q0EZG8 Cluster: DNA mismatch repair protein; n=1;
Mariprofundus ferrooxydans PV-1|Rep: DNA mismatch repair
protein - Mariprofundus ferrooxydans PV-1
Length = 850
Score = 38.7 bits (86), Expect = 0.13
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +3
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDFAHSGFP-E 488
QQ+ +KS DC+LF+++G FYE++ DAA L + K D +G P
Sbjct: 3 QQYLKIKSEYADCLLFYRMGDFYEMFFDDAAEASKILDITLTKRGKAGGDDIPMAGVPWH 62
Query: 489 SAYGRMASTLVSKGYKIA 542
A G +A LV+ G ++A
Sbjct: 63 QAEGYLA-RLVAAGKRVA 79
>UniRef50_A0L7L5 Cluster: DNA mismatch repair protein MutS; n=1;
Magnetococcus sp. MC-1|Rep: DNA mismatch repair protein
MutS - Magnetococcus sp. (strain MC-1)
Length = 868
Score = 38.7 bits (86), Expect = 0.13
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +3
Query: 315 QTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-----MKGD-FAHS 476
QTP Q+ +K+ + + +LFF++G FYEL+ DA L + +G+ +
Sbjct: 6 QTPMIAQYLSIKAAHPETLLFFRMGDFYELFFDDAKQAAEALNIALTSRGKSEGEPIPMA 65
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A + L+ G+K+A
Sbjct: 66 GIPVHARQTYLNKLIEAGFKVA 87
>UniRef50_O51737 Cluster: DNA mismatch repair protein mutS; n=3;
Borrelia burgdorferi group|Rep: DNA mismatch repair
protein mutS - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 862
Score = 37.9 bits (84), Expect = 0.23
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNEL 440
K+ TP +Q+ +K D VLFF+VG FYE++ D A+ V++L
Sbjct: 3 KNVTPMIRQYLDIKKKYKDAVLFFRVGSFYEMF-FDDAIEVSKL 45
>UniRef50_Q6FC54 Cluster: DNA mismatch repair protein mutS; n=13;
Gammaproteobacteria|Rep: DNA mismatch repair protein
mutS - Acinetobacter sp. (strain ADP1)
Length = 881
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS 449
L S TP QQ++ +K + +LF+++G FYEL+ DA LG +
Sbjct: 10 LSSYTPMMQQYFKVKLEHQHALLFYRMGDFYELFFDDARKAAKLLGIT 57
>UniRef50_Q5NL79 Cluster: DNA mismatch repair protein mutS; n=11;
Alphaproteobacteria|Rep: DNA mismatch repair protein
mutS - Zymomonas mobilis
Length = 891
Score = 37.5 bits (83), Expect = 0.30
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA 419
TP +Q++ +K+ DC+LF+++G F+EL+ DA
Sbjct: 21 TPMMEQYYELKAQAQDCLLFYRMGDFFELFFDDA 54
>UniRef50_UPI00006CBD0E Cluster: MutS domain III family protein;
n=1; Tetrahymena thermophila SB210|Rep: MutS domain III
family protein - Tetrahymena thermophila SB210
Length = 1368
Score = 37.1 bits (82), Expect = 0.40
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 231 IRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQ 332
++DA R D P+Y+P TL++P LK +TP Q
Sbjct: 308 LKDAEGRPVDDPEYDPSTLFIPIQELKKETPLFQ 341
>UniRef50_Q2S254 Cluster: DNA mismatch repair protein MutS; n=1;
Salinibacter ruber DSM 13855|Rep: DNA mismatch repair
protein MutS - Salinibacter ruber (strain DSM 13855)
Length = 908
Score = 37.1 bits (82), Expect = 0.40
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------GDFA 470
+ +TP +Q++ +K + +L F++G FYE + DA LG + + D
Sbjct: 9 RGRTPLMRQYYKIKERHPKAILLFRMGDFYESFDDDAKTVSRLLGITLTERNNGDADDVP 68
Query: 471 HSGFPESAYGRMASTLVSKGYKIA 542
+GFP A L+ G ++A
Sbjct: 69 MAGFPHHALDSHLPKLIRSGLRVA 92
>UniRef50_A7M3N4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 753
Score = 37.1 bits (82), Expect = 0.40
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS---YMKGDFA-HS 476
++ +P Q W +K + D + + G+ Y LY+ DAA G LG + Y + F+ +
Sbjct: 650 ENMSPKRQFWDNLKEKHPDALYLIRAGEVYRLYNEDAAKGAKILGITVKEYPEHGFSTFA 709
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
FP + LV G ++A
Sbjct: 710 EFPRTQLDSYLPKLVRAGERVA 731
>UniRef50_Q5NEV8 Cluster: DNA mismatch repair protein mutS; n=20;
Francisella tularensis|Rep: DNA mismatch repair protein
mutS - Francisella tularensis subsp. tularensis
Length = 857
Score = 37.1 bits (82), Expect = 0.40
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +3
Query: 306 LKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY-MKG-----DF 467
+ + TP QQ+ +KS D +LF+++G FYEL+ DA L + +G
Sbjct: 15 ISNHTPMIQQYLKIKSQYQDILLFYRMGDFYELFFDDAKKAAELLDITLTARGKSNGESI 74
Query: 468 AHSGFPESAYGRMASTLVSKGYKIA 542
+G P A + +V KG IA
Sbjct: 75 PMAGVPYHAAEAYIAKIVKKGLSIA 99
>UniRef50_Q6AQ04 Cluster: DNA mismatch repair protein mutS; n=7;
Deltaproteobacteria|Rep: DNA mismatch repair protein
mutS - Desulfotalea psychrophila
Length = 879
Score = 37.1 bits (82), Expect = 0.40
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSY----MKGDFAH---S 476
TP QQ++ +K + +LF+++G FYE++ DA LG + K D A
Sbjct: 7 TPMMQQYFKLKEQHPHTILFYRMGDFYEMFFEDAITASKILGITLTSRNKKSDSAQIPMC 66
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P A + +V G ++A
Sbjct: 67 GIPYHALQGYLAKMVEAGKRVA 88
>UniRef50_A6G9B7 Cluster: DNA mismatch repair protein; n=1;
Plesiocystis pacifica SIR-1|Rep: DNA mismatch repair
protein - Plesiocystis pacifica SIR-1
Length = 930
Score = 36.7 bits (81), Expect = 0.53
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +3
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------FAHSGFPES 491
+Q+ +K D ++ F++G FYEL+ DA L + D +G P
Sbjct: 2 RQYLDIKRRYPDAIVMFRMGDFYELFFEDAVTVGPVLDIAVTTRDKKAEDPVPMAGVPYH 61
Query: 492 AYGRMASTLVSKGYKIA 542
A G TLV +GYK+A
Sbjct: 62 AIGGYLRTLVERGYKVA 78
>UniRef50_UPI0000ECB4A8 Cluster: Nucleolar phosphoprotein p130
(Nucleolar 130 kDa protein) (140 kDa nucleolar
phosphoprotein) (Nopp140) (Nucleolar and coiled-body
phosphoprotein 1).; n=2; Gallus gallus|Rep: Nucleolar
phosphoprotein p130 (Nucleolar 130 kDa protein) (140 kDa
nucleolar phosphoprotein) (Nopp140) (Nucleolar and
coiled-body phosphoprotein 1). - Gallus gallus
Length = 688
Score = 36.3 bits (80), Expect = 0.70
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 57 DSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
+S E P + K K TA +K K +LP + KS E+SSD
Sbjct: 82 ESSSEEEEAAPPAKKPAKATAVTKPKAVLPSKKAKSSSEDSSD 124
>UniRef50_A7PKP7 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=4; Magnoliophyta|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 735
Score = 35.5 bits (78), Expect = 1.2
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 14/175 (8%)
Frame = +3
Query: 57 DSFKYEPN-QTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWL--KPD 227
D K+ P +PK N N + + K K +++ EEE VHC+++ + +
Sbjct: 41 DRPKWNPRTHSPKHNHNNHSESSGKKKNKFIDDDDDDDEEEEGGERKVHCEVEVISWRER 100
Query: 228 KIRDAMKRKPD-------HPDYNPRTLYVPPDFLKSQTPA-HQQWWIMKSTNFDCVLFFK 383
+I+ + D DY ++P + P H ++ F L++
Sbjct: 101 RIKAEILVNADIESVWDALTDYERLADFIPNLVCSGRIPCPHPGRIWLEQRGFQRALYWH 160
Query: 384 VGK--FYELYHMDAAVGVNELGFSYMKGDF-AHSGFPESAYGRMASTLVSKGYKI 539
+ +L + A EL FS + GDF G YG+ +ST S Y++
Sbjct: 161 IEARVVLDLQEVPNAANDRELRFSMVDGDFKKFEGKWSLKYGKRSST-TSLSYEV 214
>UniRef50_Q1ZXG7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 379
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +3
Query: 54 QDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKI 233
+D+ N N K G K + I E N + ++ SDG+ + PD+I
Sbjct: 302 EDNNNNNNNNNRNDINNNKNNQGEKKEQIFEEMNNNNDDKNKSDGSGDSSGITTPPPDEI 361
Query: 234 RDAMKRKPDHPDYNPRTL 287
+ + K + D N +T+
Sbjct: 362 KPTVIEKDEKLDINEKTV 379
>UniRef50_Q62J26 Cluster: DNA mismatch repair protein mutS; n=169;
Proteobacteria|Rep: DNA mismatch repair protein mutS -
Burkholderia mallei (Pseudomonas mallei)
Length = 891
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA 419
TP QQ+ +KS + D ++F+++G FYEL+ DA
Sbjct: 21 TPMMQQYLRIKSEHPDTLVFYRMGDFYELFFEDA 54
>UniRef50_Q64BA6 Cluster: Putative uncharacterized protein; n=2;
environmental samples|Rep: Putative uncharacterized
protein - uncultured archaeon GZfos27E6
Length = 585
Score = 35.1 bits (77), Expect = 1.6
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 509 FDSSIERLQNSFAVAE-QAHNDSSSYGVCF---IDTSIGLFHLGQFEDDKHSSRLLTTLA 676
FD+ +RLQ+ ++E Q HND Y V F I++ G H + E K S L+ LA
Sbjct: 244 FDALEKRLQSDKFMSEAQKHNDKQGYSVDFVRRIESLFGFSHSKESESGKFSKDLVRVLA 303
Query: 677 HY 682
Y
Sbjct: 304 IY 305
>UniRef50_Q8RBF4 Cluster: Predicted xylanase/chitin deacetylase;
n=1; Thermoanaerobacter tengcongensis|Rep: Predicted
xylanase/chitin deacetylase - Thermoanaerobacter
tengcongensis
Length = 324
Score = 34.7 bits (76), Expect = 2.1
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +3
Query: 51 LQDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDK 230
LQ +F Y NQ N NT + + SKTI EE P S+ E+ N+V + P+K
Sbjct: 32 LQTNF-YSANQKENVNLNTLDSKSNNSKTITSEERPLSETEQ----NYVSSTPEPSTPEK 86
Query: 231 IRDAMKRKPDH 263
+ + + D+
Sbjct: 87 VLEKHNKDLDN 97
>UniRef50_Q64S96 Cluster: Putative DNA primase; n=1; Bacteroides
fragilis|Rep: Putative DNA primase - Bacteroides
fragilis
Length = 732
Score = 34.7 bits (76), Expect = 2.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFS---YMKGDF-AHS 476
K +P Q W +K+ + D + + Y LY+ DA G LG + Y +GD A +
Sbjct: 636 KGISPERQLWDKLKANHPDALQLLRTKDGYRLYNEDAVQGAKILGITLKEYPEGDITAST 695
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
F S LV G ++A
Sbjct: 696 EFSTEQLDNYLSKLVRAGARVA 717
>UniRef50_Q2GE72 Cluster: DNA mismatch repair protein MutS; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: DNA mismatch
repair protein MutS - Neorickettsia sennetsu (strain
Miyayama)
Length = 815
Score = 34.7 bits (76), Expect = 2.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 321 PAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF------SYMKGDFAHSGF 482
PA +++ ++ D V+F++VG FYE++ DA + LG +Y D G
Sbjct: 7 PAMKRYLEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDIPMCGV 66
Query: 483 PESAYGRMASTLVSKGYKIA 542
P S+ + LV G K+A
Sbjct: 67 PVSSCEVYINKLVKLGRKVA 86
>UniRef50_A7BWV9 Cluster: DNA mismatch repair protein MutS; n=1;
Beggiatoa sp. PS|Rep: DNA mismatch repair protein MutS -
Beggiatoa sp. PS
Length = 107
Score = 34.7 bits (76), Expect = 2.1
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 363 DCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHS-----GFPESAYGRMASTLVSK 527
DCVL +VG F ++ DA V G G + GFP+S + LV
Sbjct: 20 DCVLLMQVGAFMQVMSEDAEVLFEVTGLKLQMGGDVDAPVKLGGFPKSGLDKYIGQLVRA 79
Query: 528 GYKIA 542
GY +A
Sbjct: 80 GYSVA 84
>UniRef50_P61673 Cluster: DNA mismatch repair protein mutS; n=9;
Wolbachia|Rep: DNA mismatch repair protein mutS -
Wolbachia pipientis wMel
Length = 849
Score = 34.7 bits (76), Expect = 2.1
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +3
Query: 303 FLKSQ-TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK------G 461
F+K + TP +Q+ +K+ D +LF+++G FYEL+ DA L K
Sbjct: 21 FVKEKNTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQ 80
Query: 462 DFAHSGFPESAYGRMASTLVSKGYKIA 542
+ G P + L+ G+K+A
Sbjct: 81 EIPMCGVPAHSSESYLHKLIDLGFKVA 107
>UniRef50_Q7V9M5 Cluster: DNA mismatch repair protein mutS; n=6;
Prochlorococcus marinus|Rep: DNA mismatch repair protein
mutS - Prochlorococcus marinus
Length = 914
Score = 34.7 bits (76), Expect = 2.1
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNEL------GFSYMK--GDFAH 473
TP + + +K + + +L +++G F+E + DA +G++EL G K G
Sbjct: 90 TPVLRHYVELKQKHPERILLYRLGDFFECFFEDA-IGLSELLELTLTGKEGGKKIGRVPM 148
Query: 474 SGFPESAYGRMASTLVSKGYKIA 542
+G P A R STL+ KG +A
Sbjct: 149 AGIPHHAAERYCSTLIQKGLSVA 171
>UniRef50_A4V7C3 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas fluorescens SBW25|Rep: Putative
uncharacterized protein - Pseudomonas fluorescens SBW25
Length = 446
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 336 WWIMKSTNFDCVLF--FKVGKFYELYHMDAAVGVN--ELGFSYMKGDFAHSGFPESAYGR 503
W TNF+ + GK + ++HM A V V L +KGDFAHS F + G
Sbjct: 21 WSYPSVTNFNIIFLGGSGAGKTHTIHHMAANVYVRGTTLHVIDIKGDFAHSNFEATGLGH 80
Query: 504 M 506
M
Sbjct: 81 M 81
>UniRef50_Q383W1 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 596
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -2
Query: 426 QQQHPCDTIHRIYQL*RTIHNQNWLISLSTIVDEQVSDFLRNPVEHTESSDYNL 265
Q +H +T+ Y L R HN ++ + + VD +V+DFL++P T +++
Sbjct: 92 QARHCFNTLVLFYFLDRLKHNSHFCVDFANPVDPRVADFLQSPQSLTSIGKFSI 145
>UniRef50_A5DEV6 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 960
Score = 34.3 bits (75), Expect = 2.8
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Frame = +3
Query: 309 KSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD-------- 464
K +TP QQ+ +K+ DCVL +VG Y+ + +DA L ++ G+
Sbjct: 91 KKRTPLDQQFIDLKNEYPDCVLAIQVGYKYKFFGVDAVPVSRILNIMFIPGNLTERDATH 150
Query: 465 --FAHSGFPESAYGRMASTLVSKGYKIA 542
FA+ P++ L++ G K+A
Sbjct: 151 DKFAYCSVPDNRLHIHLQRLLTNGLKVA 178
>UniRef50_UPI000023F365 Cluster: predicted protein; n=1; Gibberella
zeae PH-1|Rep: predicted protein - Gibberella zeae PH-1
Length = 179
Score = 33.9 bits (74), Expect = 3.7
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 255 PDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVN 434
P H D PR + + D S +W + N++ FF YE H DA +G++
Sbjct: 56 PCHDDLEPRNILIKRDGTHSG-----KWHVAAVINWEMAGFFPFA--YEYGHKDAQLGLS 108
Query: 435 ELGFSY 452
L FSY
Sbjct: 109 NLHFSY 114
>UniRef50_Q6EME6 Cluster: Hnh endonuclease; n=4;
Enterobacteriaceae|Rep: Hnh endonuclease - Escherichia
coli
Length = 302
Score = 33.9 bits (74), Expect = 3.7
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 324 AHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMK--GDFAHSGFPESAY 497
A ++W+I + C F +GK Y+L+ M A +N LG K G F G + A
Sbjct: 41 ALKKWFIEPDHSCTC---FDIGKKYDLHSMSANGVINGLGGRVQKQLGRFEVKGVGKIAS 97
Query: 498 GRMASTLVS----KGYKIASRWLNRHIMIQAVME 587
G T++ KG + W R ++QA+ E
Sbjct: 98 GTKFITVMKSREIKGNPKRNLWTIREELVQAIKE 131
>UniRef50_A6GR75 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 423
Score = 33.9 bits (74), Expect = 3.7
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 369 HNQNWLISLSTIVDEQVSDFLRNPVEHTESSDYNLDGP 256
+ +WL ++S + D D+LR+PV++ + YN++ P
Sbjct: 380 YENSWLEAVSRLPDPPQVDYLRDPVDYMKPRSYNINDP 417
>UniRef50_Q22N96 Cluster: TBC domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: TBC domain containing
protein - Tetrahymena thermophila SB210
Length = 456
Score = 33.9 bits (74), Expect = 3.7
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 54 QDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKI 233
QDS K +P+SNKN+++ + +K +L E + + SS H KL + K+
Sbjct: 25 QDSQK--DKASPQSNKNSQSQKINNTKGVLEEHTGAANDRLSSKS---HPKLKYKHSLKV 79
Query: 234 RDAMKRKPDHPDYNPRTLYVP--PDFLKSQTPAHQQ 335
D++ + H YN + + P +Q HQ+
Sbjct: 80 EDSLDKINIHRVYNKKEDFTPIGQSITNNQYQNHQE 115
>UniRef50_UPI000155553E Cluster: PREDICTED: hypothetical protein,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein, partial - Ornithorhynchus anatinus
Length = 466
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 74 TKSNPKK*QEYQNYCWIKIKNNIT*RKPKEPGGR 175
T+S PK+ + + YC +K+K+ + RKPK+ GR
Sbjct: 88 TRSKPKRKEVVKPYCGLKVKDARSVRKPKDSPGR 121
>UniRef50_Q7S2D5 Cluster: Putative uncharacterized protein
NCU05943.1; n=2; Sordariales|Rep: Putative
uncharacterized protein NCU05943.1 - Neurospora crassa
Length = 1050
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 54 QDSFKYEPNQTPKSNKNTKTTAGSKSKTI--LPEENPKSQ 167
Q S K +P+ P+ K+ KT AG K KT +PE+ PK +
Sbjct: 156 QVSQKPKPSPVPEPKKDAKTAAGQKRKTTEPVPEKEPKQK 195
>UniRef50_Q8K9D2 Cluster: DNA mismatch repair protein mutS; n=3;
Buchnera aphidicola|Rep: DNA mismatch repair protein
mutS - Buchnera aphidicola subsp. Schizaphis graminum
Length = 805
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 312 SQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDA 419
+ TP +Q+ +KS + +LF+++G FYEL++ DA
Sbjct: 12 NHTPMIKQYLSLKSQYPNMLLFYQMGDFYELFYEDA 47
>UniRef50_A0LG76 Cluster: DNA mismatch repair protein MutS
precursor; n=2; Deltaproteobacteria|Rep: DNA mismatch
repair protein MutS precursor - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 889
Score = 33.1 bits (72), Expect = 6.5
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGD------FAHSG 479
TP QQ+ +K D +L +++G FYE++ DA L + D G
Sbjct: 5 TPMMQQYLEIKEKYPDALLLYRMGDFYEMFMDDAVTASGLLEIALTSRDRQSEVRIPMCG 64
Query: 480 FPESAYGRMASTLVSKGYKIA 542
P A + LVS G K+A
Sbjct: 65 VPYHAAEGYIARLVSAGKKVA 85
>UniRef50_O18529 Cluster: Rap8; n=1; Rhynchosciara americana|Rep:
Rap8 - Rhynchosciara americana (Fungus gnat)
Length = 281
Score = 33.1 bits (72), Expect = 6.5
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 81 QTPKSNKNTKTTAGSKSKTI--LPEENPKSQEEESSDGNWVHC 203
Q + NKN K T GS KTI L ++ K+QE+ S GN + C
Sbjct: 93 QYKEENKNLKETIGSLKKTIEELKKQLSKAQEDLRSCGNALEC 135
>UniRef50_A7S9X1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 433
Score = 33.1 bits (72), Expect = 6.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAH---SGFPESAYGRMASTLVSKGYKI 539
V+ F+VG FYE+Y DA +L K +GFP + + LV G++I
Sbjct: 66 VVLFQVGDFYEIYGKDAIDVSQKLSLRLTKSATVSKLMAGFPVRSLNSWLTPLVQHGFQI 125
Query: 540 A 542
A
Sbjct: 126 A 126
>UniRef50_A0RXX2 Cluster: Putative uncharacterized protein; n=1;
Cenarchaeum symbiosum|Rep: Putative uncharacterized
protein - Cenarchaeum symbiosum
Length = 267
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 482 EARVCEITFHVGESKFIDPNSSIHVIQFIEFTNFEEQYTIKIG 354
+AR E TF +G S I P++ + Q +E T+F YTI G
Sbjct: 110 DARSAETTFELGASGIITPSTPSGLTQRVEGTDFSLSYTITGG 152
>UniRef50_A0B976 Cluster: DNA mismatch repair protein MutS; n=1;
Methanosaeta thermophila PT|Rep: DNA mismatch repair
protein MutS - Methanosaeta thermophila (strain DSM 6194
/ PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 857
Score = 33.1 bits (72), Expect = 6.5
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +3
Query: 318 TPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF---SYMKGDFAH----S 476
+P +Q+ +K D +L F+VG FYE + DA L S K D + +
Sbjct: 6 SPLMEQYSRIKQQCPDALLLFRVGDFYETFGEDAITTSRTLNITLTSRQKDDEGNRIPLA 65
Query: 477 GFPESAYGRMASTLVSKGYKIA 542
G P + S LV+ G+K+A
Sbjct: 66 GIPYHSLDVYLSRLVNAGHKVA 87
>UniRef50_Q56239 Cluster: DNA mismatch repair protein mutS; n=5;
Thermus|Rep: DNA mismatch repair protein mutS - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 819
Score = 33.1 bits (72), Expect = 6.5
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +3
Query: 321 PAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGF---SYMKGDFA--HSGFP 485
P QQ+ ++ D +L F+VG FYE + DA LG DF +G P
Sbjct: 23 PLLQQYVELRDRYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIP 82
Query: 486 ESAYGRMASTLVSKGYKIA 542
A+ A L+ G+++A
Sbjct: 83 IRAFDAYAERLLKMGFRLA 101
>UniRef50_A6VYS0 Cluster: CRISPR-associated protein, Csy4 family;
n=1; Marinomonas sp. MWYL1|Rep: CRISPR-associated
protein, Csy4 family - Marinomonas sp. MWYL1
Length = 199
Score = 32.7 bits (71), Expect = 8.6
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 3/128 (2%)
Frame = +3
Query: 153 NPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPD-FLKSQTPAH 329
N K+ E + G W+H D++ I D + +N R+ PD +K + H
Sbjct: 71 NDKTDLERLNFGKWLHRLEDYVHIKSIADVPNDVISYESFNRRSKSGSPDKHIKRRMQRH 130
Query: 330 QQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSG--FPESAYGR 503
+ W + F K K M + NE S ++ + A S + YG
Sbjct: 131 NETWEQAAAFFKGYSMEKADKDLPFIRMKSLHSDNEFCMSIIRKEAAPSNKHIMFNTYGL 190
Query: 504 MASTLVSK 527
A ++ K
Sbjct: 191 SAEGVLPK 198
>UniRef50_Q552L1 Cluster: DNA mismatch repair protein; n=1;
Dictyostelium discoideum AX4|Rep: DNA mismatch repair
protein - Dictyostelium discoideum AX4
Length = 898
Score = 32.7 bits (71), Expect = 8.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 369 VLFFKVGKFYELYHMDAAVGVNELGFS 449
+LFF++G FYE++ DA + N LG +
Sbjct: 15 ILFFRLGDFYEMFDEDAKIASNLLGIT 41
>UniRef50_Q24C11 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1235
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 60 SFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRD 239
S KY+ P+ ++N ++ K K I P N ++S + KLD+ PD++ +
Sbjct: 591 SSKYDYPAAPEESENPISSQTKKKKPINPIRNDSGISDDSLENKNQKNKLDYNSPDQVLN 650
Query: 240 AMKRKPDH 263
DH
Sbjct: 651 HNNHALDH 658
>UniRef50_Q6CSE2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome D of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 928
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +3
Query: 90 KSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPD 269
KS N +++ S S +L K + E+ S+ + H +D L ++ +A+ R +
Sbjct: 50 KSFANGGSSSSSNSAMVLKSGQSKLKNEDGSEVSDTHHMIDVLPSFEMYNALHRNIPRGN 109
Query: 270 YNPRTLYVPPDFLKSQT 320
NP +PP +L+ ++
Sbjct: 110 VNPDQHDLPPSYLEVES 126
>UniRef50_Q6CN28 Cluster: KNR4/SMI1 homolog; n=1; Kluyveromyces
lactis|Rep: KNR4/SMI1 homolog - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 535
Score = 32.7 bits (71), Expect = 8.6
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 54 QDSFKYEPNQTPKSNKNTKTT-AGSKSKTILPEENPKSQEEESS 182
Q++ K+E N++ + +NT+T+ G+ + PEE PK Q +++S
Sbjct: 447 QETSKHEQNESTNAVENTETSQEGAVETSEKPEEKPKKQSKKAS 490
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,855,445
Number of Sequences: 1657284
Number of extensions: 14764998
Number of successful extensions: 45959
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 43523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45855
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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