Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1290
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.14 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 60  SFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGN 191
           +FK +P Q     ++ +T+    S   + +E  K +E +S++ N
Sbjct: 422 AFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNN 465


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 147 EENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYV 293
           E+NP ++  +    + V   LDW K D     M    +  D  P T+ V
Sbjct: 200 EDNPHAKLYDYDLSSHVITILDWTKEDGTDKFMSHIHNDGDNKPDTILV 248


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 525 SILESKPYVRRRFQGSQSVRNHLSCRRIQVH*PQQQH 415
           ++ E++PYVR     +Q V      R+     PQQQ+
Sbjct: 323 TVNEAQPYVRNTTVPTQGVARMSRGRQYNYPNPQQQY 359


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 525 SILESKPYVRRRFQGSQSVRNHLSCRRIQVH*PQQQH 415
           ++ E++PYVR     +Q V      R+     PQQQ+
Sbjct: 271 TVNEAQPYVRNTTVPTQGVARMSRGRQYNYPNPQQQY 307


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQWW 341
           +N   LYVPP   KS       W+
Sbjct: 112 HNGSCLYVPPGIFKSTCKMDITWF 135


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQWW 341
           +N   LYVPP   KS       W+
Sbjct: 112 HNGSCLYVPPGIFKSTCKIDITWF 135


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQW 338
           YN    Y   D+L S T +H Q+
Sbjct: 253 YNNYPYYSNMDYLSSSTMSHSQF 275


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 413  HVIQFIEFTNFE 378
            HV+ FIE  NF+
Sbjct: 1927 HVVDFIETNNFD 1938


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,539
Number of Sequences: 336
Number of extensions: 3961
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)